Cargando…
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
The recent widespread application of whole-genome sequencing (WGS) for microbial disease investigations has spurred the development of new bioinformatics tools, including a notable proliferation of phylogenomics pipelines designed for infectious disease surveillance and outbreak investigation. Trans...
Autores principales: | Petkau, Aaron, Mabon, Philip, Sieffert, Cameron, Knox, Natalie C., Cabral, Jennifer, Iskander, Mariam, Iskander, Mark, Weedmark, Kelly, Zaheer, Rahat, Katz, Lee S., Nadon, Celine, Reimer, Aleisha, Taboada, Eduardo, Beiko, Robert G., Hsiao, William, Brinkman, Fiona, Graham, Morag, Van Domselaar, Gary |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628696/ https://www.ncbi.nlm.nih.gov/pubmed/29026651 http://dx.doi.org/10.1099/mgen.0.000116 |
Ejemplares similares
-
A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens
por: Katz, Lee S., et al.
Publicado: (2017) -
Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria
por: Reimer, Aleisha, et al.
Publicado: (2019) -
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations
por: Marinier, Eric, et al.
Publicado: (2017) -
Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach
por: Rumore, Jillian, et al.
Publicado: (2023) -
Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa
por: Reimer, Aleisha R., et al.
Publicado: (2011)