Cargando…

Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths

Electrical forces are the background of all the interactions occurring in biochemical systems. From here and by using a combination of ab-initio and ad-hoc models, we introduce the first description of electric field profiles with intrabond resolution to support a characterization of single bond for...

Descripción completa

Detalles Bibliográficos
Autores principales: Ruiz-Blanco, Y. B., Almeida, Y., Sotomayor-Torres, C. M., García, Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628848/
https://www.ncbi.nlm.nih.gov/pubmed/28982182
http://dx.doi.org/10.1371/journal.pone.0185638
_version_ 1783268951402217472
author Ruiz-Blanco, Y. B.
Almeida, Y.
Sotomayor-Torres, C. M.
García, Y.
author_facet Ruiz-Blanco, Y. B.
Almeida, Y.
Sotomayor-Torres, C. M.
García, Y.
author_sort Ruiz-Blanco, Y. B.
collection PubMed
description Electrical forces are the background of all the interactions occurring in biochemical systems. From here and by using a combination of ab-initio and ad-hoc models, we introduce the first description of electric field profiles with intrabond resolution to support a characterization of single bond forces attending to its electrical origin. This fundamental issue has eluded a physical description so far. Our method is applied to describe hydrogen bonds (HB) in DNA base pairs. Numerical results reveal that base pairs in DNA could be equivalent considering HB strength contributions, which challenges previous interpretations of thermodynamic properties of DNA based on the assumption that Adenine/Thymine pairs are weaker than Guanine/Cytosine pairs due to the sole difference in the number of HB. Thus, our methodology provides solid foundations to support the development of extended models intended to go deeper into the molecular mechanisms of DNA functioning.
format Online
Article
Text
id pubmed-5628848
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-56288482017-10-20 Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths Ruiz-Blanco, Y. B. Almeida, Y. Sotomayor-Torres, C. M. García, Y. PLoS One Research Article Electrical forces are the background of all the interactions occurring in biochemical systems. From here and by using a combination of ab-initio and ad-hoc models, we introduce the first description of electric field profiles with intrabond resolution to support a characterization of single bond forces attending to its electrical origin. This fundamental issue has eluded a physical description so far. Our method is applied to describe hydrogen bonds (HB) in DNA base pairs. Numerical results reveal that base pairs in DNA could be equivalent considering HB strength contributions, which challenges previous interpretations of thermodynamic properties of DNA based on the assumption that Adenine/Thymine pairs are weaker than Guanine/Cytosine pairs due to the sole difference in the number of HB. Thus, our methodology provides solid foundations to support the development of extended models intended to go deeper into the molecular mechanisms of DNA functioning. Public Library of Science 2017-10-05 /pmc/articles/PMC5628848/ /pubmed/28982182 http://dx.doi.org/10.1371/journal.pone.0185638 Text en © 2017 Ruiz-Blanco et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ruiz-Blanco, Y. B.
Almeida, Y.
Sotomayor-Torres, C. M.
García, Y.
Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title_full Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title_fullStr Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title_full_unstemmed Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title_short Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths
title_sort unveiled electric profiles within hydrogen bonds suggest dna base pairs with similar bond strengths
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628848/
https://www.ncbi.nlm.nih.gov/pubmed/28982182
http://dx.doi.org/10.1371/journal.pone.0185638
work_keys_str_mv AT ruizblancoyb unveiledelectricprofileswithinhydrogenbondssuggestdnabasepairswithsimilarbondstrengths
AT almeiday unveiledelectricprofileswithinhydrogenbondssuggestdnabasepairswithsimilarbondstrengths
AT sotomayortorrescm unveiledelectricprofileswithinhydrogenbondssuggestdnabasepairswithsimilarbondstrengths
AT garciay unveiledelectricprofileswithinhydrogenbondssuggestdnabasepairswithsimilarbondstrengths