Cargando…

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

Cost-effective, ecologically relevant, sensitive, and standardized indicators are requisites of biomonitoring. DNA metabarcoding of macroinvertebrate communities is a potentially transformative biomonitoring technique that can reduce cost and time constraints while providing information-rich, high r...

Descripción completa

Detalles Bibliográficos
Autores principales: Emilson, Caroline E., Thompson, Dean G., Venier, Lisa A., Porter, Teresita M., Swystun, Tom, Chartrand, Derek, Capell, Scott, Hajibabaei, Mehrdad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630640/
https://www.ncbi.nlm.nih.gov/pubmed/28986575
http://dx.doi.org/10.1038/s41598-017-13157-x
_version_ 1783269260977504256
author Emilson, Caroline E.
Thompson, Dean G.
Venier, Lisa A.
Porter, Teresita M.
Swystun, Tom
Chartrand, Derek
Capell, Scott
Hajibabaei, Mehrdad
author_facet Emilson, Caroline E.
Thompson, Dean G.
Venier, Lisa A.
Porter, Teresita M.
Swystun, Tom
Chartrand, Derek
Capell, Scott
Hajibabaei, Mehrdad
author_sort Emilson, Caroline E.
collection PubMed
description Cost-effective, ecologically relevant, sensitive, and standardized indicators are requisites of biomonitoring. DNA metabarcoding of macroinvertebrate communities is a potentially transformative biomonitoring technique that can reduce cost and time constraints while providing information-rich, high resolution taxonomic data for the assessment of watershed condition. Here, we assess the utility of DNA metabarcoding to provide aquatic indicator data for evaluation of forested watershed condition across Canadian eastern boreal watersheds, subject to natural variation and low-intensity harvest management. We do this by comparing the similarity of DNA metabarcoding and morphologically derived macroinvertebrate metrics (i.e. richness, % Ephemeroptera, Plecoptera and Trichoptera, % chironomid), and the ability of DNA metabarcoding and morphological metrics to detect key gradients in stream condition linked to forested watershed features. Our results show consistency between methods, where common DNA metabarcoding and morphological macroinvertebrate metrics are positively correlated and indicate the same key gradients in stream condition (i.e. dissolved oxygen, and dissolved organic carbon, total nitrogen and conductivity) linked to watershed size and shifts in forest composition across watersheds. Our study demonstrates the potential usefulness of macroinvertebrate DNA metabarcoding to future application in broad-scale biomonitoring of watershed condition across environmental gradients.
format Online
Article
Text
id pubmed-5630640
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-56306402017-10-17 DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient Emilson, Caroline E. Thompson, Dean G. Venier, Lisa A. Porter, Teresita M. Swystun, Tom Chartrand, Derek Capell, Scott Hajibabaei, Mehrdad Sci Rep Article Cost-effective, ecologically relevant, sensitive, and standardized indicators are requisites of biomonitoring. DNA metabarcoding of macroinvertebrate communities is a potentially transformative biomonitoring technique that can reduce cost and time constraints while providing information-rich, high resolution taxonomic data for the assessment of watershed condition. Here, we assess the utility of DNA metabarcoding to provide aquatic indicator data for evaluation of forested watershed condition across Canadian eastern boreal watersheds, subject to natural variation and low-intensity harvest management. We do this by comparing the similarity of DNA metabarcoding and morphologically derived macroinvertebrate metrics (i.e. richness, % Ephemeroptera, Plecoptera and Trichoptera, % chironomid), and the ability of DNA metabarcoding and morphological metrics to detect key gradients in stream condition linked to forested watershed features. Our results show consistency between methods, where common DNA metabarcoding and morphological macroinvertebrate metrics are positively correlated and indicate the same key gradients in stream condition (i.e. dissolved oxygen, and dissolved organic carbon, total nitrogen and conductivity) linked to watershed size and shifts in forest composition across watersheds. Our study demonstrates the potential usefulness of macroinvertebrate DNA metabarcoding to future application in broad-scale biomonitoring of watershed condition across environmental gradients. Nature Publishing Group UK 2017-10-06 /pmc/articles/PMC5630640/ /pubmed/28986575 http://dx.doi.org/10.1038/s41598-017-13157-x Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Emilson, Caroline E.
Thompson, Dean G.
Venier, Lisa A.
Porter, Teresita M.
Swystun, Tom
Chartrand, Derek
Capell, Scott
Hajibabaei, Mehrdad
DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title_full DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title_fullStr DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title_full_unstemmed DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title_short DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
title_sort dna metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630640/
https://www.ncbi.nlm.nih.gov/pubmed/28986575
http://dx.doi.org/10.1038/s41598-017-13157-x
work_keys_str_mv AT emilsoncarolinee dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT thompsondeang dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT venierlisaa dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT porterteresitam dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT swystuntom dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT chartrandderek dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT capellscott dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient
AT hajibabaeimehrdad dnametabarcodingandmorphologicalmacroinvertebratemetricsrevealthesamechangesinborealwatershedsacrossanenvironmentalgradient