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A collection of enhancer trap insertional mutants for functional genomics in tomato

With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections...

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Autores principales: Pérez‐Martín, Fernando, Yuste‐Lisbona, Fernando J., Pineda, Benito, Angarita‐Díaz, María Pilar, García‐Sogo, Begoña, Antón, Teresa, Sánchez, Sibilla, Giménez, Estela, Atarés, Alejandro, Fernández‐Lozano, Antonia, Ortíz‐Atienza, Ana, García‐Alcázar, Manuel, Castañeda, Laura, Fonseca, Rocío, Capel, Carmen, Goergen, Geraldine, Sánchez, Jorge, Quispe, Jorge L., Capel, Juan, Angosto, Trinidad, Moreno, Vicente, Lozano, Rafael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633825/
https://www.ncbi.nlm.nih.gov/pubmed/28317264
http://dx.doi.org/10.1111/pbi.12728
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author Pérez‐Martín, Fernando
Yuste‐Lisbona, Fernando J.
Pineda, Benito
Angarita‐Díaz, María Pilar
García‐Sogo, Begoña
Antón, Teresa
Sánchez, Sibilla
Giménez, Estela
Atarés, Alejandro
Fernández‐Lozano, Antonia
Ortíz‐Atienza, Ana
García‐Alcázar, Manuel
Castañeda, Laura
Fonseca, Rocío
Capel, Carmen
Goergen, Geraldine
Sánchez, Jorge
Quispe, Jorge L.
Capel, Juan
Angosto, Trinidad
Moreno, Vicente
Lozano, Rafael
author_facet Pérez‐Martín, Fernando
Yuste‐Lisbona, Fernando J.
Pineda, Benito
Angarita‐Díaz, María Pilar
García‐Sogo, Begoña
Antón, Teresa
Sánchez, Sibilla
Giménez, Estela
Atarés, Alejandro
Fernández‐Lozano, Antonia
Ortíz‐Atienza, Ana
García‐Alcázar, Manuel
Castañeda, Laura
Fonseca, Rocío
Capel, Carmen
Goergen, Geraldine
Sánchez, Jorge
Quispe, Jorge L.
Capel, Juan
Angosto, Trinidad
Moreno, Vicente
Lozano, Rafael
author_sort Pérez‐Martín, Fernando
collection PubMed
description With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐DNA collection in tomato (Solanum lycopersicum L.), which has been produced by Agrobacterium‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐DNA mutants, one of these genes codes for a UTP‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species.
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spelling pubmed-56338252017-10-23 A collection of enhancer trap insertional mutants for functional genomics in tomato Pérez‐Martín, Fernando Yuste‐Lisbona, Fernando J. Pineda, Benito Angarita‐Díaz, María Pilar García‐Sogo, Begoña Antón, Teresa Sánchez, Sibilla Giménez, Estela Atarés, Alejandro Fernández‐Lozano, Antonia Ortíz‐Atienza, Ana García‐Alcázar, Manuel Castañeda, Laura Fonseca, Rocío Capel, Carmen Goergen, Geraldine Sánchez, Jorge Quispe, Jorge L. Capel, Juan Angosto, Trinidad Moreno, Vicente Lozano, Rafael Plant Biotechnol J Research Articles With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐DNA collection in tomato (Solanum lycopersicum L.), which has been produced by Agrobacterium‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐DNA mutants, one of these genes codes for a UTP‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species. John Wiley and Sons Inc. 2017-04-20 2017-11 /pmc/articles/PMC5633825/ /pubmed/28317264 http://dx.doi.org/10.1111/pbi.12728 Text en © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Pérez‐Martín, Fernando
Yuste‐Lisbona, Fernando J.
Pineda, Benito
Angarita‐Díaz, María Pilar
García‐Sogo, Begoña
Antón, Teresa
Sánchez, Sibilla
Giménez, Estela
Atarés, Alejandro
Fernández‐Lozano, Antonia
Ortíz‐Atienza, Ana
García‐Alcázar, Manuel
Castañeda, Laura
Fonseca, Rocío
Capel, Carmen
Goergen, Geraldine
Sánchez, Jorge
Quispe, Jorge L.
Capel, Juan
Angosto, Trinidad
Moreno, Vicente
Lozano, Rafael
A collection of enhancer trap insertional mutants for functional genomics in tomato
title A collection of enhancer trap insertional mutants for functional genomics in tomato
title_full A collection of enhancer trap insertional mutants for functional genomics in tomato
title_fullStr A collection of enhancer trap insertional mutants for functional genomics in tomato
title_full_unstemmed A collection of enhancer trap insertional mutants for functional genomics in tomato
title_short A collection of enhancer trap insertional mutants for functional genomics in tomato
title_sort collection of enhancer trap insertional mutants for functional genomics in tomato
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633825/
https://www.ncbi.nlm.nih.gov/pubmed/28317264
http://dx.doi.org/10.1111/pbi.12728
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