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A collection of enhancer trap insertional mutants for functional genomics in tomato
With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633825/ https://www.ncbi.nlm.nih.gov/pubmed/28317264 http://dx.doi.org/10.1111/pbi.12728 |
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author | Pérez‐Martín, Fernando Yuste‐Lisbona, Fernando J. Pineda, Benito Angarita‐Díaz, María Pilar García‐Sogo, Begoña Antón, Teresa Sánchez, Sibilla Giménez, Estela Atarés, Alejandro Fernández‐Lozano, Antonia Ortíz‐Atienza, Ana García‐Alcázar, Manuel Castañeda, Laura Fonseca, Rocío Capel, Carmen Goergen, Geraldine Sánchez, Jorge Quispe, Jorge L. Capel, Juan Angosto, Trinidad Moreno, Vicente Lozano, Rafael |
author_facet | Pérez‐Martín, Fernando Yuste‐Lisbona, Fernando J. Pineda, Benito Angarita‐Díaz, María Pilar García‐Sogo, Begoña Antón, Teresa Sánchez, Sibilla Giménez, Estela Atarés, Alejandro Fernández‐Lozano, Antonia Ortíz‐Atienza, Ana García‐Alcázar, Manuel Castañeda, Laura Fonseca, Rocío Capel, Carmen Goergen, Geraldine Sánchez, Jorge Quispe, Jorge L. Capel, Juan Angosto, Trinidad Moreno, Vicente Lozano, Rafael |
author_sort | Pérez‐Martín, Fernando |
collection | PubMed |
description | With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐DNA collection in tomato (Solanum lycopersicum L.), which has been produced by Agrobacterium‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐DNA mutants, one of these genes codes for a UTP‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species. |
format | Online Article Text |
id | pubmed-5633825 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-56338252017-10-23 A collection of enhancer trap insertional mutants for functional genomics in tomato Pérez‐Martín, Fernando Yuste‐Lisbona, Fernando J. Pineda, Benito Angarita‐Díaz, María Pilar García‐Sogo, Begoña Antón, Teresa Sánchez, Sibilla Giménez, Estela Atarés, Alejandro Fernández‐Lozano, Antonia Ortíz‐Atienza, Ana García‐Alcázar, Manuel Castañeda, Laura Fonseca, Rocío Capel, Carmen Goergen, Geraldine Sánchez, Jorge Quispe, Jorge L. Capel, Juan Angosto, Trinidad Moreno, Vicente Lozano, Rafael Plant Biotechnol J Research Articles With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐DNA collection in tomato (Solanum lycopersicum L.), which has been produced by Agrobacterium‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐DNA mutants, one of these genes codes for a UTP‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species. John Wiley and Sons Inc. 2017-04-20 2017-11 /pmc/articles/PMC5633825/ /pubmed/28317264 http://dx.doi.org/10.1111/pbi.12728 Text en © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Pérez‐Martín, Fernando Yuste‐Lisbona, Fernando J. Pineda, Benito Angarita‐Díaz, María Pilar García‐Sogo, Begoña Antón, Teresa Sánchez, Sibilla Giménez, Estela Atarés, Alejandro Fernández‐Lozano, Antonia Ortíz‐Atienza, Ana García‐Alcázar, Manuel Castañeda, Laura Fonseca, Rocío Capel, Carmen Goergen, Geraldine Sánchez, Jorge Quispe, Jorge L. Capel, Juan Angosto, Trinidad Moreno, Vicente Lozano, Rafael A collection of enhancer trap insertional mutants for functional genomics in tomato |
title | A collection of enhancer trap insertional mutants for functional genomics in tomato |
title_full | A collection of enhancer trap insertional mutants for functional genomics in tomato |
title_fullStr | A collection of enhancer trap insertional mutants for functional genomics in tomato |
title_full_unstemmed | A collection of enhancer trap insertional mutants for functional genomics in tomato |
title_short | A collection of enhancer trap insertional mutants for functional genomics in tomato |
title_sort | collection of enhancer trap insertional mutants for functional genomics in tomato |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633825/ https://www.ncbi.nlm.nih.gov/pubmed/28317264 http://dx.doi.org/10.1111/pbi.12728 |
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