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Transcriptomic Survey of the Midgut of Anthonomus grandis (Coleoptera: Curculionidae)
Anthonomus grandis Boheman is a key pest in cotton crops in the New World. Its larval stage develops within the flower bud using it as food and as protection against its predators. This behavior limits the effectiveness of its control using conventional insecticide applications and biocontrol techni...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634044/ https://www.ncbi.nlm.nih.gov/pubmed/25473064 http://dx.doi.org/10.1093/jisesa/ieu081 |
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author | Salvador, Ricardo Príncipi, Darío Berretta, Marcelo Fernández, Paula Paniego, Norma Sciocco-Cap, Alicia Hopp, Esteban |
author_facet | Salvador, Ricardo Príncipi, Darío Berretta, Marcelo Fernández, Paula Paniego, Norma Sciocco-Cap, Alicia Hopp, Esteban |
author_sort | Salvador, Ricardo |
collection | PubMed |
description | Anthonomus grandis Boheman is a key pest in cotton crops in the New World. Its larval stage develops within the flower bud using it as food and as protection against its predators. This behavior limits the effectiveness of its control using conventional insecticide applications and biocontrol techniques. In spite of its importance, little is known about its genome sequence and, more important, its specific expression in key organs like the midgut. Total mRNA isolated from larval midguts was used for pyrosequencing. Sequence reads were assembled and annotated to generate a unigene data set. In total, 400,000 reads from A. grandis midgut with an average length of 237 bp were assembled and combined into 20,915 contigs. The assembled reads fell into 6,621 genes models. BlastX search using the NCBI-NR database showed that 3,006 unigenes had significant matches to known sequences. Gene Ontology (GO) mapping analysis evidenced that A. grandis is able to transcripts coding for proteins involved in catalytic processing of macromolecules that allows its adaptation to very different feeding source scenarios. Furthermore, transcripts encoding for proteins involved in detoxification mechanisms such as p450 genes, glutathione-S-transferase , and carboxylesterases are also expressed. This is the first report of a transcriptomic study in A. grandis and the largest set of sequence data reported for this species. These data are valuable resources to expand the knowledge of this insect group and could be used in the design of new control strategies based in molecular information. |
format | Online Article Text |
id | pubmed-5634044 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-56340442018-04-05 Transcriptomic Survey of the Midgut of Anthonomus grandis (Coleoptera: Curculionidae) Salvador, Ricardo Príncipi, Darío Berretta, Marcelo Fernández, Paula Paniego, Norma Sciocco-Cap, Alicia Hopp, Esteban J Insect Sci Research Anthonomus grandis Boheman is a key pest in cotton crops in the New World. Its larval stage develops within the flower bud using it as food and as protection against its predators. This behavior limits the effectiveness of its control using conventional insecticide applications and biocontrol techniques. In spite of its importance, little is known about its genome sequence and, more important, its specific expression in key organs like the midgut. Total mRNA isolated from larval midguts was used for pyrosequencing. Sequence reads were assembled and annotated to generate a unigene data set. In total, 400,000 reads from A. grandis midgut with an average length of 237 bp were assembled and combined into 20,915 contigs. The assembled reads fell into 6,621 genes models. BlastX search using the NCBI-NR database showed that 3,006 unigenes had significant matches to known sequences. Gene Ontology (GO) mapping analysis evidenced that A. grandis is able to transcripts coding for proteins involved in catalytic processing of macromolecules that allows its adaptation to very different feeding source scenarios. Furthermore, transcripts encoding for proteins involved in detoxification mechanisms such as p450 genes, glutathione-S-transferase , and carboxylesterases are also expressed. This is the first report of a transcriptomic study in A. grandis and the largest set of sequence data reported for this species. These data are valuable resources to expand the knowledge of this insect group and could be used in the design of new control strategies based in molecular information. Oxford University Press 2014-01-01 /pmc/articles/PMC5634044/ /pubmed/25473064 http://dx.doi.org/10.1093/jisesa/ieu081 Text en © The Author 2014. Published by Oxford University Press on behalf of the Entomological Society of America. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Salvador, Ricardo Príncipi, Darío Berretta, Marcelo Fernández, Paula Paniego, Norma Sciocco-Cap, Alicia Hopp, Esteban Transcriptomic Survey of the Midgut of Anthonomus grandis (Coleoptera: Curculionidae) |
title |
Transcriptomic Survey of the Midgut of
Anthonomus grandis
(Coleoptera: Curculionidae)
|
title_full |
Transcriptomic Survey of the Midgut of
Anthonomus grandis
(Coleoptera: Curculionidae)
|
title_fullStr |
Transcriptomic Survey of the Midgut of
Anthonomus grandis
(Coleoptera: Curculionidae)
|
title_full_unstemmed |
Transcriptomic Survey of the Midgut of
Anthonomus grandis
(Coleoptera: Curculionidae)
|
title_short |
Transcriptomic Survey of the Midgut of
Anthonomus grandis
(Coleoptera: Curculionidae)
|
title_sort | transcriptomic survey of the midgut of
anthonomus grandis
(coleoptera: curculionidae) |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634044/ https://www.ncbi.nlm.nih.gov/pubmed/25473064 http://dx.doi.org/10.1093/jisesa/ieu081 |
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