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High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634878/ https://www.ncbi.nlm.nih.gov/pubmed/29046739 http://dx.doi.org/10.1186/s40793-017-0273-z |
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author | Li, Jingxin Guo, Wei Shi, Manman Cao, Yajing Wang, Gejiao |
author_facet | Li, Jingxin Guo, Wei Shi, Manman Cao, Yajing Wang, Gejiao |
author_sort | Li, Jingxin |
collection | PubMed |
description | Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se(0)), respectively. Thus, strain CY1(T) has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1(T), together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome. |
format | Online Article Text |
id | pubmed-5634878 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-56348782017-10-18 High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination Li, Jingxin Guo, Wei Shi, Manman Cao, Yajing Wang, Gejiao Stand Genomic Sci Short Genome Report Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se(0)), respectively. Thus, strain CY1(T) has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1(T), together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome. BioMed Central 2017-10-10 /pmc/articles/PMC5634878/ /pubmed/29046739 http://dx.doi.org/10.1186/s40793-017-0273-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Li, Jingxin Guo, Wei Shi, Manman Cao, Yajing Wang, Gejiao High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title | High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title_full | High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title_fullStr | High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title_full_unstemmed | High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title_short | High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination |
title_sort | high-quality-draft genomic sequence of paenibacillus ferrarius cy1(t) with the potential to bioremediate cd, cr and se contamination |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634878/ https://www.ncbi.nlm.nih.gov/pubmed/29046739 http://dx.doi.org/10.1186/s40793-017-0273-z |
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