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High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination

Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also...

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Autores principales: Li, Jingxin, Guo, Wei, Shi, Manman, Cao, Yajing, Wang, Gejiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634878/
https://www.ncbi.nlm.nih.gov/pubmed/29046739
http://dx.doi.org/10.1186/s40793-017-0273-z
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author Li, Jingxin
Guo, Wei
Shi, Manman
Cao, Yajing
Wang, Gejiao
author_facet Li, Jingxin
Guo, Wei
Shi, Manman
Cao, Yajing
Wang, Gejiao
author_sort Li, Jingxin
collection PubMed
description Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se(0)), respectively. Thus, strain CY1(T) has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1(T), together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.
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spelling pubmed-56348782017-10-18 High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination Li, Jingxin Guo, Wei Shi, Manman Cao, Yajing Wang, Gejiao Stand Genomic Sci Short Genome Report Paenibacillus ferrarius CY1(T) (= KCTC 33419(T) = CCTCC AB2013369(T)) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO(4) (2−)) to S(2−), which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se(0)), respectively. Thus, strain CY1(T) has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1(T), together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome. BioMed Central 2017-10-10 /pmc/articles/PMC5634878/ /pubmed/29046739 http://dx.doi.org/10.1186/s40793-017-0273-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Li, Jingxin
Guo, Wei
Shi, Manman
Cao, Yajing
Wang, Gejiao
High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title_full High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title_fullStr High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title_full_unstemmed High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title_short High-quality-draft genomic sequence of Paenibacillus ferrarius CY1(T) with the potential to bioremediate Cd, Cr and Se contamination
title_sort high-quality-draft genomic sequence of paenibacillus ferrarius cy1(t) with the potential to bioremediate cd, cr and se contamination
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5634878/
https://www.ncbi.nlm.nih.gov/pubmed/29046739
http://dx.doi.org/10.1186/s40793-017-0273-z
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