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Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome

In 1977, Frederick Sanger developed a new method for DNA sequencing based on the chain termination method, now known as the Sanger sequencing method (SSM).  Recently, massive parallel sequencing, better known as next-generation sequencing (NGS),  is replacing the SSM for detecting mutations in cardi...

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Autores principales: Totomoch-Serra, Armando, Marquez, Manlio F., Cervantes-Barragán, David E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635448/
https://www.ncbi.nlm.nih.gov/pubmed/29093808
http://dx.doi.org/10.12688/f1000research.11610.1
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author Totomoch-Serra, Armando
Marquez, Manlio F.
Cervantes-Barragán, David E.
author_facet Totomoch-Serra, Armando
Marquez, Manlio F.
Cervantes-Barragán, David E.
author_sort Totomoch-Serra, Armando
collection PubMed
description In 1977, Frederick Sanger developed a new method for DNA sequencing based on the chain termination method, now known as the Sanger sequencing method (SSM).  Recently, massive parallel sequencing, better known as next-generation sequencing (NGS),  is replacing the SSM for detecting mutations in cardiovascular diseases with a genetic background. The present opinion article wants to remark that “targeted” SSM is still effective as a first-line approach for the molecular diagnosis of some specific conditions, as is the case for Andersen-Tawil syndrome (ATS). ATS is described as a rare multisystemic autosomal dominant channelopathy syndrome caused mainly by a heterozygous mutation in the KCNJ2 gene . KCJN2 has particular characteristics that make it attractive for “directed” SSM. KCNJ2 has a sequence of 17,510 base pairs (bp), and a short coding region with two exons (exon 1=166 bp and exon 2=5220 bp), half of the mutations are located in the C-terminal cytosolic domain, a mutational hotspot has been described in residue Arg218, and this gene explains the phenotype in 60% of ATS cases that fulfill all the clinical criteria of the disease. In order to increase the diagnosis of ATS we urge cardiologists to search for facial and muscular abnormalities in subjects with frequent ventricular arrhythmias (especially bigeminy) and prominent U waves on the electrocardiogram.
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spelling pubmed-56354482017-10-31 Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome Totomoch-Serra, Armando Marquez, Manlio F. Cervantes-Barragán, David E. F1000Res Opinion Article In 1977, Frederick Sanger developed a new method for DNA sequencing based on the chain termination method, now known as the Sanger sequencing method (SSM).  Recently, massive parallel sequencing, better known as next-generation sequencing (NGS),  is replacing the SSM for detecting mutations in cardiovascular diseases with a genetic background. The present opinion article wants to remark that “targeted” SSM is still effective as a first-line approach for the molecular diagnosis of some specific conditions, as is the case for Andersen-Tawil syndrome (ATS). ATS is described as a rare multisystemic autosomal dominant channelopathy syndrome caused mainly by a heterozygous mutation in the KCNJ2 gene . KCJN2 has particular characteristics that make it attractive for “directed” SSM. KCNJ2 has a sequence of 17,510 base pairs (bp), and a short coding region with two exons (exon 1=166 bp and exon 2=5220 bp), half of the mutations are located in the C-terminal cytosolic domain, a mutational hotspot has been described in residue Arg218, and this gene explains the phenotype in 60% of ATS cases that fulfill all the clinical criteria of the disease. In order to increase the diagnosis of ATS we urge cardiologists to search for facial and muscular abnormalities in subjects with frequent ventricular arrhythmias (especially bigeminy) and prominent U waves on the electrocardiogram. F1000Research 2017-06-28 /pmc/articles/PMC5635448/ /pubmed/29093808 http://dx.doi.org/10.12688/f1000research.11610.1 Text en Copyright: © 2017 Totomoch-Serra A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Opinion Article
Totomoch-Serra, Armando
Marquez, Manlio F.
Cervantes-Barragán, David E.
Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title_full Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title_fullStr Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title_full_unstemmed Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title_short Sanger sequencing as a first-line approach for molecular diagnosis of Andersen-Tawil syndrome
title_sort sanger sequencing as a first-line approach for molecular diagnosis of andersen-tawil syndrome
topic Opinion Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635448/
https://www.ncbi.nlm.nih.gov/pubmed/29093808
http://dx.doi.org/10.12688/f1000research.11610.1
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