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Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology

Ecology has become a data intensive science over the last decades which often relies on the reuse of data in cross-experimental analyses. However, finding data which qualifies for the reuse in a specific context can be challenging. It requires good quality metadata and annotations as well as efficie...

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Autores principales: Pfaff, Claas-Thido, Eichenberg, David, Liebergesell, Mario, König-Ries, Birgitta, Wirth, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5638456/
https://www.ncbi.nlm.nih.gov/pubmed/29023519
http://dx.doi.org/10.1371/journal.pone.0186170
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author Pfaff, Claas-Thido
Eichenberg, David
Liebergesell, Mario
König-Ries, Birgitta
Wirth, Christian
author_facet Pfaff, Claas-Thido
Eichenberg, David
Liebergesell, Mario
König-Ries, Birgitta
Wirth, Christian
author_sort Pfaff, Claas-Thido
collection PubMed
description Ecology has become a data intensive science over the last decades which often relies on the reuse of data in cross-experimental analyses. However, finding data which qualifies for the reuse in a specific context can be challenging. It requires good quality metadata and annotations as well as efficient search strategies. To date, full text search (often on the metadata only) is the most widely used search strategy although it is known to be inaccurate. Faceted navigation is providing a filter mechanism which is based on fine granular metadata, categorizing search objects along numeric and categorical parameters relevant for their discovery. Selecting from these parameters during a full text search creates a system of filters which allows to refine and improve the results towards more relevance. We developed a framework for the efficient annotation and faceted navigation in ecology. It consists of an XML schema for storing the annotation of search objects and is accompanied by a vocabulary focused on ecology to support the annotation process. The framework consolidates ideas which originate from widely accepted metadata standards, textbooks, scientific literature, and vocabularies as well as from expert knowledge contributed by researchers from ecology and adjacent disciplines.
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spelling pubmed-56384562017-10-20 Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology Pfaff, Claas-Thido Eichenberg, David Liebergesell, Mario König-Ries, Birgitta Wirth, Christian PLoS One Research Article Ecology has become a data intensive science over the last decades which often relies on the reuse of data in cross-experimental analyses. However, finding data which qualifies for the reuse in a specific context can be challenging. It requires good quality metadata and annotations as well as efficient search strategies. To date, full text search (often on the metadata only) is the most widely used search strategy although it is known to be inaccurate. Faceted navigation is providing a filter mechanism which is based on fine granular metadata, categorizing search objects along numeric and categorical parameters relevant for their discovery. Selecting from these parameters during a full text search creates a system of filters which allows to refine and improve the results towards more relevance. We developed a framework for the efficient annotation and faceted navigation in ecology. It consists of an XML schema for storing the annotation of search objects and is accompanied by a vocabulary focused on ecology to support the annotation process. The framework consolidates ideas which originate from widely accepted metadata standards, textbooks, scientific literature, and vocabularies as well as from expert knowledge contributed by researchers from ecology and adjacent disciplines. Public Library of Science 2017-10-12 /pmc/articles/PMC5638456/ /pubmed/29023519 http://dx.doi.org/10.1371/journal.pone.0186170 Text en © 2017 Pfaff et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pfaff, Claas-Thido
Eichenberg, David
Liebergesell, Mario
König-Ries, Birgitta
Wirth, Christian
Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title_full Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title_fullStr Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title_full_unstemmed Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title_short Essential Annotation Schema for Ecology (EASE)—A framework supporting the efficient data annotation and faceted navigation in ecology
title_sort essential annotation schema for ecology (ease)—a framework supporting the efficient data annotation and faceted navigation in ecology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5638456/
https://www.ncbi.nlm.nih.gov/pubmed/29023519
http://dx.doi.org/10.1371/journal.pone.0186170
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