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Counteracting structural errors in ensemble forecast of influenza outbreaks

For influenza forecasts generated using dynamical models, forecast inaccuracy is partly attributable to the nonlinear growth of error. As a consequence, quantification of the nonlinear error structure in current forecast models is needed so that this growth can be corrected and forecast skill improv...

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Autores principales: Pei, Sen, Shaman, Jeffrey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640637/
https://www.ncbi.nlm.nih.gov/pubmed/29030543
http://dx.doi.org/10.1038/s41467-017-01033-1
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author Pei, Sen
Shaman, Jeffrey
author_facet Pei, Sen
Shaman, Jeffrey
author_sort Pei, Sen
collection PubMed
description For influenza forecasts generated using dynamical models, forecast inaccuracy is partly attributable to the nonlinear growth of error. As a consequence, quantification of the nonlinear error structure in current forecast models is needed so that this growth can be corrected and forecast skill improved. Here, we inspect the error growth of a compartmental influenza model and find that a robust error structure arises naturally from the nonlinear model dynamics. By counteracting these structural errors, diagnosed using error breeding, we develop a new forecast approach that combines dynamical error correction and statistical filtering techniques. In retrospective forecasts of historical influenza outbreaks for 95 US cities from 2003 to 2014, overall forecast accuracy for outbreak peak timing, peak intensity and attack rate, are substantially improved for predicted lead times up to 10 weeks. This error growth correction method can be generalized to improve the forecast accuracy of other infectious disease dynamical models.
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spelling pubmed-56406372017-10-18 Counteracting structural errors in ensemble forecast of influenza outbreaks Pei, Sen Shaman, Jeffrey Nat Commun Article For influenza forecasts generated using dynamical models, forecast inaccuracy is partly attributable to the nonlinear growth of error. As a consequence, quantification of the nonlinear error structure in current forecast models is needed so that this growth can be corrected and forecast skill improved. Here, we inspect the error growth of a compartmental influenza model and find that a robust error structure arises naturally from the nonlinear model dynamics. By counteracting these structural errors, diagnosed using error breeding, we develop a new forecast approach that combines dynamical error correction and statistical filtering techniques. In retrospective forecasts of historical influenza outbreaks for 95 US cities from 2003 to 2014, overall forecast accuracy for outbreak peak timing, peak intensity and attack rate, are substantially improved for predicted lead times up to 10 weeks. This error growth correction method can be generalized to improve the forecast accuracy of other infectious disease dynamical models. Nature Publishing Group UK 2017-10-13 /pmc/articles/PMC5640637/ /pubmed/29030543 http://dx.doi.org/10.1038/s41467-017-01033-1 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Pei, Sen
Shaman, Jeffrey
Counteracting structural errors in ensemble forecast of influenza outbreaks
title Counteracting structural errors in ensemble forecast of influenza outbreaks
title_full Counteracting structural errors in ensemble forecast of influenza outbreaks
title_fullStr Counteracting structural errors in ensemble forecast of influenza outbreaks
title_full_unstemmed Counteracting structural errors in ensemble forecast of influenza outbreaks
title_short Counteracting structural errors in ensemble forecast of influenza outbreaks
title_sort counteracting structural errors in ensemble forecast of influenza outbreaks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640637/
https://www.ncbi.nlm.nih.gov/pubmed/29030543
http://dx.doi.org/10.1038/s41467-017-01033-1
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