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Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis

Grapevine is an important and extensively grown fruit crop, which is severely hampered by drought worldwide. So, comprehending the impact of drought on grapevine genetic resources is necessary. In the present study, RNA-sequencing was executed using cDNA libraries constructed from both drought-stres...

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Autores principales: Haider, Muhammad Salman, Zhang, Cheng, Kurjogi, Mahantesh M., Pervaiz, Tariq, Zheng, Ting, Zhang, Chaobo, Lide, Chen, Shangguan, Lingfie, Fang, Jinggui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640638/
https://www.ncbi.nlm.nih.gov/pubmed/29030640
http://dx.doi.org/10.1038/s41598-017-13464-3
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author Haider, Muhammad Salman
Zhang, Cheng
Kurjogi, Mahantesh M.
Pervaiz, Tariq
Zheng, Ting
Zhang, Chaobo
Lide, Chen
Shangguan, Lingfie
Fang, Jinggui
author_facet Haider, Muhammad Salman
Zhang, Cheng
Kurjogi, Mahantesh M.
Pervaiz, Tariq
Zheng, Ting
Zhang, Chaobo
Lide, Chen
Shangguan, Lingfie
Fang, Jinggui
author_sort Haider, Muhammad Salman
collection PubMed
description Grapevine is an important and extensively grown fruit crop, which is severely hampered by drought worldwide. So, comprehending the impact of drought on grapevine genetic resources is necessary. In the present study, RNA-sequencing was executed using cDNA libraries constructed from both drought-stress and control plants. Results generated 12,451 differentially expressed genes (DEGs), out of which 8,021 genes were up-regulated, and 4,430 were down-regulated. Further physiological and biochemical investigations were also performed to validate the biological processes associated with the development of grapevine in response to drought stress. Results also revealed that decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO(2) assimilation in the grapevine leaves. Reactive oxygen species, including stress enzymes and their related proteins, and secondary metabolites were also activated in the present study. Likewise, various hormones also induced in response to drought stress. Overall, the present study concludes that these DEGs play both positive and negative roles in drought tolerance by regulating various biological pathways of grapevine. Nevertheless, our findings have provided valuable gene information for future studies of abiotic stress in grapevine and various other fruit crops.
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spelling pubmed-56406382017-10-18 Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis Haider, Muhammad Salman Zhang, Cheng Kurjogi, Mahantesh M. Pervaiz, Tariq Zheng, Ting Zhang, Chaobo Lide, Chen Shangguan, Lingfie Fang, Jinggui Sci Rep Article Grapevine is an important and extensively grown fruit crop, which is severely hampered by drought worldwide. So, comprehending the impact of drought on grapevine genetic resources is necessary. In the present study, RNA-sequencing was executed using cDNA libraries constructed from both drought-stress and control plants. Results generated 12,451 differentially expressed genes (DEGs), out of which 8,021 genes were up-regulated, and 4,430 were down-regulated. Further physiological and biochemical investigations were also performed to validate the biological processes associated with the development of grapevine in response to drought stress. Results also revealed that decline in the rate of stomatal conductance, in turn, decrease the photosynthetic activity and CO(2) assimilation in the grapevine leaves. Reactive oxygen species, including stress enzymes and their related proteins, and secondary metabolites were also activated in the present study. Likewise, various hormones also induced in response to drought stress. Overall, the present study concludes that these DEGs play both positive and negative roles in drought tolerance by regulating various biological pathways of grapevine. Nevertheless, our findings have provided valuable gene information for future studies of abiotic stress in grapevine and various other fruit crops. Nature Publishing Group UK 2017-10-13 /pmc/articles/PMC5640638/ /pubmed/29030640 http://dx.doi.org/10.1038/s41598-017-13464-3 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Haider, Muhammad Salman
Zhang, Cheng
Kurjogi, Mahantesh M.
Pervaiz, Tariq
Zheng, Ting
Zhang, Chaobo
Lide, Chen
Shangguan, Lingfie
Fang, Jinggui
Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title_full Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title_fullStr Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title_full_unstemmed Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title_short Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
title_sort insights into grapevine defense response against drought as revealed by biochemical, physiological and rna-seq analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640638/
https://www.ncbi.nlm.nih.gov/pubmed/29030640
http://dx.doi.org/10.1038/s41598-017-13464-3
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