Cargando…

A method for named entity normalization in biomedical articles: application to diseases and plants

BACKGROUND: In biomedical articles, a named entity recognition (NER) technique that identifies entity names from texts is an important element for extracting biological knowledge from articles. After NER is applied to articles, the next step is to normalize the identified names into standard concept...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cho, Hyejin, Choi, Wonjun, Lee, Hyunju
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5640957/ https://www.ncbi.nlm.nih.gov/pubmed/29029598 http://dx.doi.org/10.1186/s12859-017-1857-8

Ejemplares similares

Biomedical named entity recognition using deep neural networks with contextual information
por: Cho, Hyejin, et al.
Publicado: (2019)

Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes
por: Cho, Hyejin, et al.
Publicado: (2022)

A corpus for plant-chemical relationships in the biomedical domain
por: Choi, Wonjun, et al.
Publicado: (2016)

A corpus of plant–disease relations in the biomedical domain
por: Kim, Baeksoo, et al.
Publicado: (2019)

Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes
por: Zhou, Huiwei, et al.
Publicado: (2020)

BERN2: an advanced neural biomedical named entity recognition and normalization tool
por: Sung, Mujeen, et al.
Publicado: (2022)

Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization
por: Cuffy, Clint, et al.
Publicado: (2022)

Improving deep learning method for biomedical named entity recognition by using entity definition information
por: Xiong, Ying, et al.
Publicado: (2021)

Analyzing transfer learning impact in biomedical cross-lingual named entity recognition and normalization
por: Rivera-Zavala, Renzo M., et al.
Publicado: (2021)

Distinguishing the species of biomedical named entities for term identification
por: Wang, Xinglong, et al.
Publicado: (2008)

Various criteria in the evaluation of biomedical named entity recognition
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2006)

Comparison of named entity recognition methodologies in biomedical documents
por: Song, Hye-Jeong, et al.
Publicado: (2018)

Towards reliable named entity recognition in the biomedical domain
por: Giorgi, John M, et al.
Publicado: (2020)

Improving biomedical named entity recognition with syntactic information
por: Tian, Yuanhe, et al.
Publicado: (2020)

Identifying disease-gene associations using a convolutional neural network-based model by embedding a biological knowledge graph with entity descriptions
por: Choi, Wonjun, et al.
Publicado: (2021)

Identification of conclusive association entities in biomedical articles
por: Liu, Rey-Long
Publicado: (2019)

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
Publicado: (2022)

Edge Weight Updating Neural Network for Named Entity Normalization
por: Jeon, Sung Hwan, et al.
Publicado: (2022)

Biomedical named entity extraction: some issues of corpus compatibilities
por: Ekbal, Asif, et al.
Publicado: (2013)

A Kernel-Based Approach for Biomedical Named Entity Recognition
por: Patra, Rakesh, et al.
Publicado: (2013)

Transfer learning for biomedical named entity recognition with neural networks
por: Giorgi, John M, et al.
Publicado: (2018)

Named Entity Recognition and Relation Detection for Biomedical Information Extraction
por: Perera, Nadeesha, et al.
Publicado: (2020)

Hierarchical shared transfer learning for biomedical named entity recognition
por: Chai, Zhaoying, et al.
Publicado: (2022)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling
por: Kaewphan, Suwisa, et al.
Publicado: (2018)

Incorporating domain knowledge in chemical and biomedical named entity recognition with word representations
por: Munkhdalai, Tsendsuren, et al.
Publicado: (2015)

NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2006)

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition
por: Yoon, Wonjin, et al.
Publicado: (2019)

Deep learning with word embeddings improves biomedical named entity recognition
por: Habibi, Maryam, et al.
Publicado: (2017)

Long short-term memory RNN for biomedical named entity recognition
por: Lyu, Chen, et al.
Publicado: (2017)

Disambiguating the species of biomedical named entities using natural language parsers
por: Wang, Xinglong, et al.
Publicado: (2010)

Evaluating Word Representation Features in Biomedical Named Entity Recognition Tasks
por: Tang, Buzhou, et al.
Publicado: (2014)

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature
por: Chen, Guocai, et al.
Publicado: (2015)

Multitask learning for biomedical named entity recognition with cross-sharing structure
por: Wang, Xi, et al.
Publicado: (2019)

SIA: a scalable interoperable annotation server for biomedical named entities
por: Kirschnick, Johannes, et al.
Publicado: (2018)

Comparing general and specialized word embeddings for biomedical named entity recognition
por: Ramos-Vargas, Rigo E., et al.
Publicado: (2021)

Leveraging network analysis to evaluate biomedical named entity recognition tools
por: García del Valle, Eduardo P., et al.
Publicado: (2021)

Biomedical named entity recognition based on fusion multi-features embedding
por: Li, Meijing, et al.
Publicado: (2023)

Text normalization for named entity recognition in Vietnamese tweets
por: Nguyen, Vu H., et al.
Publicado: (2016)

pyMeSHSim: an integrative python package for biomedical named entity recognition, normalization, and comparison of MeSH terms
por: Luo, Zhi-Hui, et al.
Publicado: (2020)

Exploiting and assessing multi-source data for supervised biomedical named entity recognition
por: Galea, Dieter, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_vsh89f8i0q5kkd14r1hin01arg