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Neural Network for Nanoscience Scanning Electron Microscope Image Recognition

In this paper we applied transfer learning techniques for image recognition, automatic categorization, and labeling of nanoscience images obtained by scanning electron microscope (SEM). Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled training set, which can be...

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Autores principales: Modarres, Mohammad Hadi, Aversa, Rossella, Cozzini, Stefano, Ciancio, Regina, Leto, Angelo, Brandino, Giuseppe Piero
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5643492/
https://www.ncbi.nlm.nih.gov/pubmed/29038550
http://dx.doi.org/10.1038/s41598-017-13565-z
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author Modarres, Mohammad Hadi
Aversa, Rossella
Cozzini, Stefano
Ciancio, Regina
Leto, Angelo
Brandino, Giuseppe Piero
author_facet Modarres, Mohammad Hadi
Aversa, Rossella
Cozzini, Stefano
Ciancio, Regina
Leto, Angelo
Brandino, Giuseppe Piero
author_sort Modarres, Mohammad Hadi
collection PubMed
description In this paper we applied transfer learning techniques for image recognition, automatic categorization, and labeling of nanoscience images obtained by scanning electron microscope (SEM). Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled training set, which can be used as a reference set for future applications of deep learning enhanced algorithms in the nanoscience domain. The categories chosen spanned the range of 0-Dimensional (0D) objects such as particles, 1D nanowires and fibres, 2D films and coated surfaces, and 3D patterned surfaces such as pillars. The training set was used to retrain on the SEM dataset and to compare many convolutional neural network models (Inception-v3, Inception-v4, ResNet). We obtained compatible results by performing a feature extraction of the different models on the same dataset. We performed additional analysis of the classifier on a second test set to further investigate the results both on particular cases and from a statistical point of view. Our algorithm was able to successfully classify around 90% of a test dataset consisting of SEM images, while reduced accuracy was found in the case of images at the boundary between two categories or containing elements of multiple categories. In these cases, the image classification did not identify a predominant category with a high score. We used the statistical outcomes from testing to deploy a semi-automatic workflow able to classify and label images generated by the SEM. Finally, a separate training was performed to determine the volume fraction of coherently aligned nanowires in SEM images. The results were compared with what was obtained using the Local Gradient Orientation method. This example demonstrates the versatility and the potential of transfer learning to address specific tasks of interest in nanoscience applications.
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spelling pubmed-56434922017-10-19 Neural Network for Nanoscience Scanning Electron Microscope Image Recognition Modarres, Mohammad Hadi Aversa, Rossella Cozzini, Stefano Ciancio, Regina Leto, Angelo Brandino, Giuseppe Piero Sci Rep Article In this paper we applied transfer learning techniques for image recognition, automatic categorization, and labeling of nanoscience images obtained by scanning electron microscope (SEM). Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled training set, which can be used as a reference set for future applications of deep learning enhanced algorithms in the nanoscience domain. The categories chosen spanned the range of 0-Dimensional (0D) objects such as particles, 1D nanowires and fibres, 2D films and coated surfaces, and 3D patterned surfaces such as pillars. The training set was used to retrain on the SEM dataset and to compare many convolutional neural network models (Inception-v3, Inception-v4, ResNet). We obtained compatible results by performing a feature extraction of the different models on the same dataset. We performed additional analysis of the classifier on a second test set to further investigate the results both on particular cases and from a statistical point of view. Our algorithm was able to successfully classify around 90% of a test dataset consisting of SEM images, while reduced accuracy was found in the case of images at the boundary between two categories or containing elements of multiple categories. In these cases, the image classification did not identify a predominant category with a high score. We used the statistical outcomes from testing to deploy a semi-automatic workflow able to classify and label images generated by the SEM. Finally, a separate training was performed to determine the volume fraction of coherently aligned nanowires in SEM images. The results were compared with what was obtained using the Local Gradient Orientation method. This example demonstrates the versatility and the potential of transfer learning to address specific tasks of interest in nanoscience applications. Nature Publishing Group UK 2017-10-16 /pmc/articles/PMC5643492/ /pubmed/29038550 http://dx.doi.org/10.1038/s41598-017-13565-z Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Modarres, Mohammad Hadi
Aversa, Rossella
Cozzini, Stefano
Ciancio, Regina
Leto, Angelo
Brandino, Giuseppe Piero
Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title_full Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title_fullStr Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title_full_unstemmed Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title_short Neural Network for Nanoscience Scanning Electron Microscope Image Recognition
title_sort neural network for nanoscience scanning electron microscope image recognition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5643492/
https://www.ncbi.nlm.nih.gov/pubmed/29038550
http://dx.doi.org/10.1038/s41598-017-13565-z
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