Towards a balanced view of the bacterial tree of life

The bacterial tree of life has recently undergone significant expansion, chiefly from candidate phyla retrieved through genome-resolved metagenomics. Bypassing the need for genome availability, we present a snapshot of bacterial phylogenetic diversity based on the recovery of high-quality SSU rRNA g...

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Autores principales: Schulz, Frederik, Eloe-Fadrosh, Emiley A., Bowers, Robert M., Jarett, Jessica, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C., Woyke, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Short Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5644168/
https://www.ncbi.nlm.nih.gov/pubmed/29041958
http://dx.doi.org/10.1186/s40168-017-0360-9
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author Schulz, Frederik
Eloe-Fadrosh, Emiley A.
Bowers, Robert M.
Jarett, Jessica
Nielsen, Torben
Ivanova, Natalia N.
Kyrpides, Nikos C.
Woyke, Tanja
author_facet Schulz, Frederik
Eloe-Fadrosh, Emiley A.
Bowers, Robert M.
Jarett, Jessica
Nielsen, Torben
Ivanova, Natalia N.
Kyrpides, Nikos C.
Woyke, Tanja
author_sort Schulz, Frederik
collection PubMed
description The bacterial tree of life has recently undergone significant expansion, chiefly from candidate phyla retrieved through genome-resolved metagenomics. Bypassing the need for genome availability, we present a snapshot of bacterial phylogenetic diversity based on the recovery of high-quality SSU rRNA gene sequences extracted from nearly 7000 metagenomes and all available reference genomes. We illuminate taxonomic richness within established bacterial phyla together with environmental distribution patterns, providing a revised framework for future phylogeny-driven sequencing efforts. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40168-017-0360-9) contains supplementary material, which is available to authorized users.
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spelling pubmed-56441682017-10-26 Towards a balanced view of the bacterial tree of life Schulz, Frederik Eloe-Fadrosh, Emiley A. Bowers, Robert M. Jarett, Jessica Nielsen, Torben Ivanova, Natalia N. Kyrpides, Nikos C. Woyke, Tanja Microbiome Short Report The bacterial tree of life has recently undergone significant expansion, chiefly from candidate phyla retrieved through genome-resolved metagenomics. Bypassing the need for genome availability, we present a snapshot of bacterial phylogenetic diversity based on the recovery of high-quality SSU rRNA gene sequences extracted from nearly 7000 metagenomes and all available reference genomes. We illuminate taxonomic richness within established bacterial phyla together with environmental distribution patterns, providing a revised framework for future phylogeny-driven sequencing efforts. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40168-017-0360-9) contains supplementary material, which is available to authorized users. BioMed Central 2017-10-17 /pmc/articles/PMC5644168/ /pubmed/29041958 http://dx.doi.org/10.1186/s40168-017-0360-9 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Report
Schulz, Frederik
Eloe-Fadrosh, Emiley A.
Bowers, Robert M.
Jarett, Jessica
Nielsen, Torben
Ivanova, Natalia N.
Kyrpides, Nikos C.
Woyke, Tanja
Towards a balanced view of the bacterial tree of life
title Towards a balanced view of the bacterial tree of life
title_full Towards a balanced view of the bacterial tree of life
title_fullStr Towards a balanced view of the bacterial tree of life
title_full_unstemmed Towards a balanced view of the bacterial tree of life
title_short Towards a balanced view of the bacterial tree of life
title_sort towards a balanced view of the bacterial tree of life
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5644168/
https://www.ncbi.nlm.nih.gov/pubmed/29041958
http://dx.doi.org/10.1186/s40168-017-0360-9
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