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Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies

BACKGROUND: Nanobodies are single-domain antibodies that contain the unique structural and functional properties of naturally-occurring heavy chain in camelidae. As a novel class of antibody, they show many advantages compared with traditional antibodies such as smaller size, higher stability, impro...

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Autores principales: Zuo, Jing, Li, Jian, Zhang, Rongxin, Xu, Longsheng, Chen, Hanhan, Jia, Xiaohuan, Su, Zhipeng, Zhao, Linhong, Huang, Xing, Xie, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646159/
https://www.ncbi.nlm.nih.gov/pubmed/29041922
http://dx.doi.org/10.1186/s12864-017-4204-6
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author Zuo, Jing
Li, Jian
Zhang, Rongxin
Xu, Longsheng
Chen, Hanhan
Jia, Xiaohuan
Su, Zhipeng
Zhao, Linhong
Huang, Xing
Xie, Wei
author_facet Zuo, Jing
Li, Jian
Zhang, Rongxin
Xu, Longsheng
Chen, Hanhan
Jia, Xiaohuan
Su, Zhipeng
Zhao, Linhong
Huang, Xing
Xie, Wei
author_sort Zuo, Jing
collection PubMed
description BACKGROUND: Nanobodies are single-domain antibodies that contain the unique structural and functional properties of naturally-occurring heavy chain in camelidae. As a novel class of antibody, they show many advantages compared with traditional antibodies such as smaller size, higher stability, improved specificity, more easily expressed in microorganisms. These unusual hallmarks make them as promising tools in basic research and clinical practice. Although thousands of nanobodies are known to be published, no single database provides searchable, unified annotation and integrative analysis tools for these various nanobodies. RESULTS: Here, we present the database of Institute Collection and Analysis of Nanobodies (iCAN). It is built for the aim that addressing the above gap to expand and accelerate the nanobody research. iCAN, as the first database of nanobody, contains the most comprehensive information to date on nanobodies and related antigens. So far, iCAN incorporates 2391 entries which include 2131 from patents and 260 from publications and provides a simple user interface for researchers to retrieve and view the detailed information of nanobodies. In addition to the data collection, iCAN also provides online bioinformatic tools for sequence analysis and characteristic feature extraction. CONCLUSIONS: In summary, iCAN enables researchers to analyze nanobody features and explore the applications of nanobodies more efficiently. iCAN is freely available at http://ican.ils.seu.edu.cn. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-017-4204-6) contains supplementary material, which is available to authorized users.
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spelling pubmed-56461592017-10-26 Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies Zuo, Jing Li, Jian Zhang, Rongxin Xu, Longsheng Chen, Hanhan Jia, Xiaohuan Su, Zhipeng Zhao, Linhong Huang, Xing Xie, Wei BMC Genomics Database BACKGROUND: Nanobodies are single-domain antibodies that contain the unique structural and functional properties of naturally-occurring heavy chain in camelidae. As a novel class of antibody, they show many advantages compared with traditional antibodies such as smaller size, higher stability, improved specificity, more easily expressed in microorganisms. These unusual hallmarks make them as promising tools in basic research and clinical practice. Although thousands of nanobodies are known to be published, no single database provides searchable, unified annotation and integrative analysis tools for these various nanobodies. RESULTS: Here, we present the database of Institute Collection and Analysis of Nanobodies (iCAN). It is built for the aim that addressing the above gap to expand and accelerate the nanobody research. iCAN, as the first database of nanobody, contains the most comprehensive information to date on nanobodies and related antigens. So far, iCAN incorporates 2391 entries which include 2131 from patents and 260 from publications and provides a simple user interface for researchers to retrieve and view the detailed information of nanobodies. In addition to the data collection, iCAN also provides online bioinformatic tools for sequence analysis and characteristic feature extraction. CONCLUSIONS: In summary, iCAN enables researchers to analyze nanobody features and explore the applications of nanobodies more efficiently. iCAN is freely available at http://ican.ils.seu.edu.cn. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-017-4204-6) contains supplementary material, which is available to authorized users. BioMed Central 2017-10-17 /pmc/articles/PMC5646159/ /pubmed/29041922 http://dx.doi.org/10.1186/s12864-017-4204-6 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Database
Zuo, Jing
Li, Jian
Zhang, Rongxin
Xu, Longsheng
Chen, Hanhan
Jia, Xiaohuan
Su, Zhipeng
Zhao, Linhong
Huang, Xing
Xie, Wei
Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title_full Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title_fullStr Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title_full_unstemmed Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title_short Institute collection and analysis of Nanobodies (iCAN): a comprehensive database and analysis platform for nanobodies
title_sort institute collection and analysis of nanobodies (ican): a comprehensive database and analysis platform for nanobodies
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646159/
https://www.ncbi.nlm.nih.gov/pubmed/29041922
http://dx.doi.org/10.1186/s12864-017-4204-6
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