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Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved am...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646661/ https://www.ncbi.nlm.nih.gov/pubmed/29093800 http://dx.doi.org/10.3897/CompCytogen.v11i3.13124 |
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author | Zhao, Yan Xie, Jihong Dou, Quanwen Wang, Junjie Zhang, Zhong |
author_facet | Zhao, Yan Xie, Jihong Dou, Quanwen Wang, Junjie Zhang, Zhong |
author_sort | Zhao, Yan |
collection | PubMed |
description | Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved among the diploid and tetraploid species. A number of sites for the dinucleotide SSRs AC, AG, and pSc119.2 was detected in all investigated species except A. mongolicum Keng, 1938. Several different trinucleotide SSRs were identified in different tetraploid species. All Agropyron species were suggested to include the basic P genome, although genome differentiation was still observed. The P genome of A. mongolicum was distinct from that of the diploid A. cristatum (Linnaeus, 1753) Gaertner, 1770. and other tetraploid species, with no hybridizations for AC, AG, or pSc119.2 observed. This finding supports designation of the P genomes of A. cristatum and A. mongolicum as P(c) and P(m), respectively. An exceptional 5S rDNA site revealed in one set of homoeologous chromosomes strongly supports the allopolyploid origin of A. desertorum (Fischer ex Link, 1821) Schultes, 1824. However, the diploid donors to A. desertorum need further investigation. Similarly, the unique FISH pattern of a pair of 5S rDNA-carrying chromosomes was indicative of a potential allopolyploid origin for A. fragile (Roth, 1800) Candargy, 1984. The conserved distribution of 5S and 45S rDNA suggests A. cristatum (4x) and A. michnoi Roshevitz, 1929 are closely related. Two forms of B chromosomes were identified among individuals A. mongolicum and A. desertorum plants. |
format | Online Article Text |
id | pubmed-5646661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-56466612017-11-01 Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH Zhao, Yan Xie, Jihong Dou, Quanwen Wang, Junjie Zhang, Zhong Comp Cytogenet Research Article Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved among the diploid and tetraploid species. A number of sites for the dinucleotide SSRs AC, AG, and pSc119.2 was detected in all investigated species except A. mongolicum Keng, 1938. Several different trinucleotide SSRs were identified in different tetraploid species. All Agropyron species were suggested to include the basic P genome, although genome differentiation was still observed. The P genome of A. mongolicum was distinct from that of the diploid A. cristatum (Linnaeus, 1753) Gaertner, 1770. and other tetraploid species, with no hybridizations for AC, AG, or pSc119.2 observed. This finding supports designation of the P genomes of A. cristatum and A. mongolicum as P(c) and P(m), respectively. An exceptional 5S rDNA site revealed in one set of homoeologous chromosomes strongly supports the allopolyploid origin of A. desertorum (Fischer ex Link, 1821) Schultes, 1824. However, the diploid donors to A. desertorum need further investigation. Similarly, the unique FISH pattern of a pair of 5S rDNA-carrying chromosomes was indicative of a potential allopolyploid origin for A. fragile (Roth, 1800) Candargy, 1984. The conserved distribution of 5S and 45S rDNA suggests A. cristatum (4x) and A. michnoi Roshevitz, 1929 are closely related. Two forms of B chromosomes were identified among individuals A. mongolicum and A. desertorum plants. Pensoft Publishers 2017-08-03 /pmc/articles/PMC5646661/ /pubmed/29093800 http://dx.doi.org/10.3897/CompCytogen.v11i3.13124 Text en Yan Zhao, Jihong Xie, Quanwen Dou, Junjie Wang, Zhong Zhang http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Zhao, Yan Xie, Jihong Dou, Quanwen Wang, Junjie Zhang, Zhong Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title | Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title_full | Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title_fullStr | Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title_full_unstemmed | Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title_short | Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH |
title_sort | diversification of the p genome among agropyron gaertn. (poaceae) species detected by fish |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646661/ https://www.ncbi.nlm.nih.gov/pubmed/29093800 http://dx.doi.org/10.3897/CompCytogen.v11i3.13124 |
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