Cargando…

Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH

Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved am...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Yan, Xie, Jihong, Dou, Quanwen, Wang, Junjie, Zhang, Zhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646661/
https://www.ncbi.nlm.nih.gov/pubmed/29093800
http://dx.doi.org/10.3897/CompCytogen.v11i3.13124
_version_ 1783272129144291328
author Zhao, Yan
Xie, Jihong
Dou, Quanwen
Wang, Junjie
Zhang, Zhong
author_facet Zhao, Yan
Xie, Jihong
Dou, Quanwen
Wang, Junjie
Zhang, Zhong
author_sort Zhao, Yan
collection PubMed
description Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved among the diploid and tetraploid species. A number of sites for the dinucleotide SSRs AC, AG, and pSc119.2 was detected in all investigated species except A. mongolicum Keng, 1938. Several different trinucleotide SSRs were identified in different tetraploid species. All Agropyron species were suggested to include the basic P genome, although genome differentiation was still observed. The P genome of A. mongolicum was distinct from that of the diploid A. cristatum (Linnaeus, 1753) Gaertner, 1770. and other tetraploid species, with no hybridizations for AC, AG, or pSc119.2 observed. This finding supports designation of the P genomes of A. cristatum and A. mongolicum as P(c) and P(m), respectively. An exceptional 5S rDNA site revealed in one set of homoeologous chromosomes strongly supports the allopolyploid origin of A. desertorum (Fischer ex Link, 1821) Schultes, 1824. However, the diploid donors to A. desertorum need further investigation. Similarly, the unique FISH pattern of a pair of 5S rDNA-carrying chromosomes was indicative of a potential allopolyploid origin for A. fragile (Roth, 1800) Candargy, 1984. The conserved distribution of 5S and 45S rDNA suggests A. cristatum (4x) and A. michnoi Roshevitz, 1929 are closely related. Two forms of B chromosomes were identified among individuals A. mongolicum and A. desertorum plants.
format Online
Article
Text
id pubmed-5646661
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Pensoft Publishers
record_format MEDLINE/PubMed
spelling pubmed-56466612017-11-01 Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH Zhao, Yan Xie, Jihong Dou, Quanwen Wang, Junjie Zhang, Zhong Comp Cytogenet Research Article Abstract. The genomes of five Agropyron Gaertner, 1770 species were characterized using all potential di- or trinucleotide simple sequence repeat (SSR) motifs and four satellite DNA repeats as fluorescence in situ hybridization (FISH) probes. The sites of 5S and 45S rDNA were relatively conserved among the diploid and tetraploid species. A number of sites for the dinucleotide SSRs AC, AG, and pSc119.2 was detected in all investigated species except A. mongolicum Keng, 1938. Several different trinucleotide SSRs were identified in different tetraploid species. All Agropyron species were suggested to include the basic P genome, although genome differentiation was still observed. The P genome of A. mongolicum was distinct from that of the diploid A. cristatum (Linnaeus, 1753) Gaertner, 1770. and other tetraploid species, with no hybridizations for AC, AG, or pSc119.2 observed. This finding supports designation of the P genomes of A. cristatum and A. mongolicum as P(c) and P(m), respectively. An exceptional 5S rDNA site revealed in one set of homoeologous chromosomes strongly supports the allopolyploid origin of A. desertorum (Fischer ex Link, 1821) Schultes, 1824. However, the diploid donors to A. desertorum need further investigation. Similarly, the unique FISH pattern of a pair of 5S rDNA-carrying chromosomes was indicative of a potential allopolyploid origin for A. fragile (Roth, 1800) Candargy, 1984. The conserved distribution of 5S and 45S rDNA suggests A. cristatum (4x) and A. michnoi Roshevitz, 1929 are closely related. Two forms of B chromosomes were identified among individuals A. mongolicum and A. desertorum plants. Pensoft Publishers 2017-08-03 /pmc/articles/PMC5646661/ /pubmed/29093800 http://dx.doi.org/10.3897/CompCytogen.v11i3.13124 Text en Yan Zhao, Jihong Xie, Quanwen Dou, Junjie Wang, Zhong Zhang http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Zhao, Yan
Xie, Jihong
Dou, Quanwen
Wang, Junjie
Zhang, Zhong
Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title_full Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title_fullStr Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title_full_unstemmed Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title_short Diversification of the P genome among Agropyron Gaertn. (Poaceae) species detected by FISH
title_sort diversification of the p genome among agropyron gaertn. (poaceae) species detected by fish
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646661/
https://www.ncbi.nlm.nih.gov/pubmed/29093800
http://dx.doi.org/10.3897/CompCytogen.v11i3.13124
work_keys_str_mv AT zhaoyan diversificationofthepgenomeamongagropyrongaertnpoaceaespeciesdetectedbyfish
AT xiejihong diversificationofthepgenomeamongagropyrongaertnpoaceaespeciesdetectedbyfish
AT douquanwen diversificationofthepgenomeamongagropyrongaertnpoaceaespeciesdetectedbyfish
AT wangjunjie diversificationofthepgenomeamongagropyrongaertnpoaceaespeciesdetectedbyfish
AT zhangzhong diversificationofthepgenomeamongagropyrongaertnpoaceaespeciesdetectedbyfish