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Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome wa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647465/ https://www.ncbi.nlm.nih.gov/pubmed/29062876 http://dx.doi.org/10.1016/j.dib.2017.09.043 |
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author | Kancherla, Reddy Prakash Durling, Mikael Brandström Stenlid, Jan Högberg, Nils |
author_facet | Kancherla, Reddy Prakash Durling, Mikael Brandström Stenlid, Jan Högberg, Nils |
author_sort | Kancherla, Reddy Prakash |
collection | PubMed |
description | Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome was sequenced by using a paired-end sequence library of Illumina and a 2.5k and 5k mate-pair library (ABI SOLiD). The final assembly adds up to a size of 45 Mb (including gaps between contigs), with a GC-content of 56%. The gene prediction resulted in 13,888 gene models. The genome sequence will be used as a basis for understanding population genomics, genome-wide association studies and wood decay mechanisms of this brown-rot fungus. |
format | Online Article Text |
id | pubmed-5647465 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-56474652017-10-23 Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 Kancherla, Reddy Prakash Durling, Mikael Brandström Stenlid, Jan Högberg, Nils Data Brief Molecular Phylogenetics and Evolution Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome was sequenced by using a paired-end sequence library of Illumina and a 2.5k and 5k mate-pair library (ABI SOLiD). The final assembly adds up to a size of 45 Mb (including gaps between contigs), with a GC-content of 56%. The gene prediction resulted in 13,888 gene models. The genome sequence will be used as a basis for understanding population genomics, genome-wide association studies and wood decay mechanisms of this brown-rot fungus. Elsevier 2017-09-25 /pmc/articles/PMC5647465/ /pubmed/29062876 http://dx.doi.org/10.1016/j.dib.2017.09.043 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Molecular Phylogenetics and Evolution Kancherla, Reddy Prakash Durling, Mikael Brandström Stenlid, Jan Högberg, Nils Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title | Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title_full | Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title_fullStr | Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title_full_unstemmed | Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title_short | Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 |
title_sort | draft genome of the brown-rot fungus fomitopsis pinicola gr9-4 |
topic | Molecular Phylogenetics and Evolution |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647465/ https://www.ncbi.nlm.nih.gov/pubmed/29062876 http://dx.doi.org/10.1016/j.dib.2017.09.043 |
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