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Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4

Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome wa...

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Autores principales: Kancherla, Reddy Prakash, Durling, Mikael Brandström, Stenlid, Jan, Högberg, Nils
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647465/
https://www.ncbi.nlm.nih.gov/pubmed/29062876
http://dx.doi.org/10.1016/j.dib.2017.09.043
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author Kancherla, Reddy Prakash
Durling, Mikael Brandström
Stenlid, Jan
Högberg, Nils
author_facet Kancherla, Reddy Prakash
Durling, Mikael Brandström
Stenlid, Jan
Högberg, Nils
author_sort Kancherla, Reddy Prakash
collection PubMed
description Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome was sequenced by using a paired-end sequence library of Illumina and a 2.5k and 5k mate-pair library (ABI SOLiD). The final assembly adds up to a size of 45 Mb (including gaps between contigs), with a GC-content of 56%. The gene prediction resulted in 13,888 gene models. The genome sequence will be used as a basis for understanding population genomics, genome-wide association studies and wood decay mechanisms of this brown-rot fungus.
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spelling pubmed-56474652017-10-23 Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4 Kancherla, Reddy Prakash Durling, Mikael Brandström Stenlid, Jan Högberg, Nils Data Brief Molecular Phylogenetics and Evolution Basidiomycete brown-rot fungi have a huge importance for wood decomposition and thus the global carbon cycle. Here, we present the genome sequence of Fomitopsis pinicola GR9-4 which represent different F. pinicola clade than the previously sequenced North American isolate FP-58527 SS1. The genome was sequenced by using a paired-end sequence library of Illumina and a 2.5k and 5k mate-pair library (ABI SOLiD). The final assembly adds up to a size of 45 Mb (including gaps between contigs), with a GC-content of 56%. The gene prediction resulted in 13,888 gene models. The genome sequence will be used as a basis for understanding population genomics, genome-wide association studies and wood decay mechanisms of this brown-rot fungus. Elsevier 2017-09-25 /pmc/articles/PMC5647465/ /pubmed/29062876 http://dx.doi.org/10.1016/j.dib.2017.09.043 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Molecular Phylogenetics and Evolution
Kancherla, Reddy Prakash
Durling, Mikael Brandström
Stenlid, Jan
Högberg, Nils
Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title_full Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title_fullStr Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title_full_unstemmed Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title_short Draft genome of the brown-rot fungus Fomitopsis pinicola GR9-4
title_sort draft genome of the brown-rot fungus fomitopsis pinicola gr9-4
topic Molecular Phylogenetics and Evolution
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647465/
https://www.ncbi.nlm.nih.gov/pubmed/29062876
http://dx.doi.org/10.1016/j.dib.2017.09.043
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