Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genom...

Descripción completa

Detalles Bibliográficos
Autores principales: Nayaka, S. Chandra, Shetty, H. Shekar, Satyavathi, C.Tara, Yadav, Rattan S., Kishor, P.B.Kavi, Nagaraju, M., Anoop, T.A., Kumar, M. Milner, Kuriakose, Boney, Chakravartty, Navajeet, Katta, A.V.S.K. Mohan, Lachagari, V.B. Reddy, Singh, Om Vir, Sahu, Pranav Pankaj, Puranik, Swati, Kaushal, Pankaj, Srivastava, Rakesh K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647520/
https://www.ncbi.nlm.nih.gov/pubmed/29062722
http://dx.doi.org/10.1016/j.btre.2017.07.006
_version_ 1783272262333366272
author Nayaka, S. Chandra
Shetty, H. Shekar
Satyavathi, C.Tara
Yadav, Rattan S.
Kishor, P.B.Kavi
Nagaraju, M.
Anoop, T.A.
Kumar, M. Milner
Kuriakose, Boney
Chakravartty, Navajeet
Katta, A.V.S.K. Mohan
Lachagari, V.B. Reddy
Singh, Om Vir
Sahu, Pranav Pankaj
Puranik, Swati
Kaushal, Pankaj
Srivastava, Rakesh K.
author_facet Nayaka, S. Chandra
Shetty, H. Shekar
Satyavathi, C.Tara
Yadav, Rattan S.
Kishor, P.B.Kavi
Nagaraju, M.
Anoop, T.A.
Kumar, M. Milner
Kuriakose, Boney
Chakravartty, Navajeet
Katta, A.V.S.K. Mohan
Lachagari, V.B. Reddy
Singh, Om Vir
Sahu, Pranav Pankaj
Puranik, Swati
Kaushal, Pankaj
Srivastava, Rakesh K.
author_sort Nayaka, S. Chandra
collection PubMed
description Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.
format Online
Article
Text
id pubmed-5647520
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-56475202017-10-23 Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen Nayaka, S. Chandra Shetty, H. Shekar Satyavathi, C.Tara Yadav, Rattan S. Kishor, P.B.Kavi Nagaraju, M. Anoop, T.A. Kumar, M. Milner Kuriakose, Boney Chakravartty, Navajeet Katta, A.V.S.K. Mohan Lachagari, V.B. Reddy Singh, Om Vir Sahu, Pranav Pankaj Puranik, Swati Kaushal, Pankaj Srivastava, Rakesh K. Biotechnol Rep (Amst) Article Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet. Elsevier 2017-08-24 /pmc/articles/PMC5647520/ /pubmed/29062722 http://dx.doi.org/10.1016/j.btre.2017.07.006 Text en © 2017 Published by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Nayaka, S. Chandra
Shetty, H. Shekar
Satyavathi, C.Tara
Yadav, Rattan S.
Kishor, P.B.Kavi
Nagaraju, M.
Anoop, T.A.
Kumar, M. Milner
Kuriakose, Boney
Chakravartty, Navajeet
Katta, A.V.S.K. Mohan
Lachagari, V.B. Reddy
Singh, Om Vir
Sahu, Pranav Pankaj
Puranik, Swati
Kaushal, Pankaj
Srivastava, Rakesh K.
Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title_full Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title_fullStr Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title_full_unstemmed Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title_short Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen
title_sort draft genome sequence of sclerospora graminicola, the pearl millet downy mildew pathogen
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647520/
https://www.ncbi.nlm.nih.gov/pubmed/29062722
http://dx.doi.org/10.1016/j.btre.2017.07.006
work_keys_str_mv AT nayakaschandra draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT shettyhshekar draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT satyavathictara draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT yadavrattans draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT kishorpbkavi draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT nagarajum draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT anoopta draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT kumarmmilner draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT kuriakoseboney draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT chakravarttynavajeet draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT kattaavskmohan draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT lachagarivbreddy draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT singhomvir draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT sahupranavpankaj draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT puranikswati draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT kaushalpankaj draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen
AT srivastavarakeshk draftgenomesequenceofsclerosporagraminicolathepearlmilletdownymildewpathogen

Ejemplares similares