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Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions
We propose a novel method for multiple clustering, which is useful for analysis of high-dimensional data containing heterogeneous types of features. Our method is based on nonparametric Bayesian mixture models in which features are automatically partitioned (into views) for each clustering solution....
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648298/ https://www.ncbi.nlm.nih.gov/pubmed/29049392 http://dx.doi.org/10.1371/journal.pone.0186566 |
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author | Tokuda, Tomoki Yoshimoto, Junichiro Shimizu, Yu Okada, Go Takamura, Masahiro Okamoto, Yasumasa Yamawaki, Shigeto Doya, Kenji |
author_facet | Tokuda, Tomoki Yoshimoto, Junichiro Shimizu, Yu Okada, Go Takamura, Masahiro Okamoto, Yasumasa Yamawaki, Shigeto Doya, Kenji |
author_sort | Tokuda, Tomoki |
collection | PubMed |
description | We propose a novel method for multiple clustering, which is useful for analysis of high-dimensional data containing heterogeneous types of features. Our method is based on nonparametric Bayesian mixture models in which features are automatically partitioned (into views) for each clustering solution. This feature partition works as feature selection for a particular clustering solution, which screens out irrelevant features. To make our method applicable to high-dimensional data, a co-clustering structure is newly introduced for each view. Further, the outstanding novelty of our method is that we simultaneously model different distribution families, such as Gaussian, Poisson, and multinomial distributions in each cluster block, which widens areas of application to real data. We apply the proposed method to synthetic and real data, and show that our method outperforms other multiple clustering methods both in recovering true cluster structures and in computation time. Finally, we apply our method to a depression dataset with no true cluster structure available, from which useful inferences are drawn about possible clustering structures of the data. |
format | Online Article Text |
id | pubmed-5648298 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-56482982017-11-03 Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions Tokuda, Tomoki Yoshimoto, Junichiro Shimizu, Yu Okada, Go Takamura, Masahiro Okamoto, Yasumasa Yamawaki, Shigeto Doya, Kenji PLoS One Research Article We propose a novel method for multiple clustering, which is useful for analysis of high-dimensional data containing heterogeneous types of features. Our method is based on nonparametric Bayesian mixture models in which features are automatically partitioned (into views) for each clustering solution. This feature partition works as feature selection for a particular clustering solution, which screens out irrelevant features. To make our method applicable to high-dimensional data, a co-clustering structure is newly introduced for each view. Further, the outstanding novelty of our method is that we simultaneously model different distribution families, such as Gaussian, Poisson, and multinomial distributions in each cluster block, which widens areas of application to real data. We apply the proposed method to synthetic and real data, and show that our method outperforms other multiple clustering methods both in recovering true cluster structures and in computation time. Finally, we apply our method to a depression dataset with no true cluster structure available, from which useful inferences are drawn about possible clustering structures of the data. Public Library of Science 2017-10-19 /pmc/articles/PMC5648298/ /pubmed/29049392 http://dx.doi.org/10.1371/journal.pone.0186566 Text en © 2017 Tokuda et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Tokuda, Tomoki Yoshimoto, Junichiro Shimizu, Yu Okada, Go Takamura, Masahiro Okamoto, Yasumasa Yamawaki, Shigeto Doya, Kenji Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title | Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title_full | Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title_fullStr | Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title_full_unstemmed | Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title_short | Multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
title_sort | multiple co-clustering based on nonparametric mixture models with heterogeneous marginal distributions |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648298/ https://www.ncbi.nlm.nih.gov/pubmed/29049392 http://dx.doi.org/10.1371/journal.pone.0186566 |
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