Cargando…

Efficient isolation method for high‐quality genomic DNA from cicada exuviae

In recent years, animal ethics issues have led researchers to explore nondestructive methods to access materials for genetic studies. Cicada exuviae are among those materials because they are cast skins that individuals left after molt and are easily collected. In this study, we aim to identify the...

Descripción completa

Detalles Bibliográficos
Autores principales: Nguyen, Hoa Quynh, Kim, Ye Inn, Borzée, Amaël, Jang, Yikweon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648668/
https://www.ncbi.nlm.nih.gov/pubmed/29075440
http://dx.doi.org/10.1002/ece3.3398
_version_ 1783272423820361728
author Nguyen, Hoa Quynh
Kim, Ye Inn
Borzée, Amaël
Jang, Yikweon
author_facet Nguyen, Hoa Quynh
Kim, Ye Inn
Borzée, Amaël
Jang, Yikweon
author_sort Nguyen, Hoa Quynh
collection PubMed
description In recent years, animal ethics issues have led researchers to explore nondestructive methods to access materials for genetic studies. Cicada exuviae are among those materials because they are cast skins that individuals left after molt and are easily collected. In this study, we aim to identify the most efficient extraction method to obtain high quantity and quality of DNA from cicada exuviae. We compared relative DNA yield and purity of six extraction protocols, including both manual protocols and available commercial kits, extracting from four different exoskeleton parts. Furthermore, amplification and sequencing of genomic DNA were evaluated in terms of availability of sequencing sequence at the expected genomic size. Both the choice of protocol and exuvia part significantly affected DNA yield and purity. Only samples that were extracted using the PowerSoil DNA Isolation kit generated gel bands of expected size as well as successful sequencing results. The failed attempts to extract DNA using other protocols could be partially explained by a low DNA yield from cicada exuviae and partly by contamination with humic acids that exist in the soil where cicada nymphs reside before emergence, as shown by spectroscopic measurements. Genomic DNA extracted from cicada exuviae could provide valuable information for species identification, allowing the investigation of genetic diversity across consecutive broods, or spatiotemporal variation among various populations. Consequently, we hope to provide a simple method to acquire pure genomic DNA applicable for multiple research purposes.
format Online
Article
Text
id pubmed-5648668
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-56486682017-10-26 Efficient isolation method for high‐quality genomic DNA from cicada exuviae Nguyen, Hoa Quynh Kim, Ye Inn Borzée, Amaël Jang, Yikweon Ecol Evol Original Research In recent years, animal ethics issues have led researchers to explore nondestructive methods to access materials for genetic studies. Cicada exuviae are among those materials because they are cast skins that individuals left after molt and are easily collected. In this study, we aim to identify the most efficient extraction method to obtain high quantity and quality of DNA from cicada exuviae. We compared relative DNA yield and purity of six extraction protocols, including both manual protocols and available commercial kits, extracting from four different exoskeleton parts. Furthermore, amplification and sequencing of genomic DNA were evaluated in terms of availability of sequencing sequence at the expected genomic size. Both the choice of protocol and exuvia part significantly affected DNA yield and purity. Only samples that were extracted using the PowerSoil DNA Isolation kit generated gel bands of expected size as well as successful sequencing results. The failed attempts to extract DNA using other protocols could be partially explained by a low DNA yield from cicada exuviae and partly by contamination with humic acids that exist in the soil where cicada nymphs reside before emergence, as shown by spectroscopic measurements. Genomic DNA extracted from cicada exuviae could provide valuable information for species identification, allowing the investigation of genetic diversity across consecutive broods, or spatiotemporal variation among various populations. Consequently, we hope to provide a simple method to acquire pure genomic DNA applicable for multiple research purposes. John Wiley and Sons Inc. 2017-09-05 /pmc/articles/PMC5648668/ /pubmed/29075440 http://dx.doi.org/10.1002/ece3.3398 Text en © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Nguyen, Hoa Quynh
Kim, Ye Inn
Borzée, Amaël
Jang, Yikweon
Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title_full Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title_fullStr Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title_full_unstemmed Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title_short Efficient isolation method for high‐quality genomic DNA from cicada exuviae
title_sort efficient isolation method for high‐quality genomic dna from cicada exuviae
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648668/
https://www.ncbi.nlm.nih.gov/pubmed/29075440
http://dx.doi.org/10.1002/ece3.3398
work_keys_str_mv AT nguyenhoaquynh efficientisolationmethodforhighqualitygenomicdnafromcicadaexuviae
AT kimyeinn efficientisolationmethodforhighqualitygenomicdnafromcicadaexuviae
AT borzeeamael efficientisolationmethodforhighqualitygenomicdnafromcicadaexuviae
AT jangyikweon efficientisolationmethodforhighqualitygenomicdnafromcicadaexuviae