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Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus

House dust mite (HDM) allergy is the leading cause of IgE-mediated hypersensitivity. Therefore identifying potential epitopes in the Dermatophagoide pteronyssinus 23 (Der p 23), a major house dust mite allergen will aid in the development of therapeutic vaccines and diagnostic kits for HDM allergy....

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Autores principales: Fanuel, Songwe, Tabesh, Saeideh, Sadroddiny, Esmaeil, Kardar, Gholam Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5651224/
https://www.ncbi.nlm.nih.gov/pubmed/29081610
http://dx.doi.org/10.6026/97320630013307
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author Fanuel, Songwe
Tabesh, Saeideh
Sadroddiny, Esmaeil
Kardar, Gholam Ali
author_facet Fanuel, Songwe
Tabesh, Saeideh
Sadroddiny, Esmaeil
Kardar, Gholam Ali
author_sort Fanuel, Songwe
collection PubMed
description House dust mite (HDM) allergy is the leading cause of IgE-mediated hypersensitivity. Therefore identifying potential epitopes in the Dermatophagoide pteronyssinus 23 (Der p 23), a major house dust mite allergen will aid in the development of therapeutic vaccines and diagnostic kits for HDM allergy. Experimental methods of epitope discovery have been widely exploited for the mapping of potential allergens. This study sought to use immunoinformatic methods to analyze the structure of Der p 23 for potential immunoreactive B and T-cell epitopes that could be useful for AIT and allergy diagnosis. We retrieved a Der p 23 allergen sequence from Genbank database and then analyzed it using a combination of web-based sequence analysis tools including the Immune Epitope Database (IEDB), Protparam, BCPREDS, ABCpred, BepiPred, Bcepred among others to predict the physiochemical properties and epitope spectra of the Der p 23 allergen. We then built 3D models of the predicted B-cell epitopes, T cell epitopes and Der p 23 for sequence structure homology analysis. Our results identified peptides 'TRWNEDE', 'TVHPTTTEQPDDK', and 'NDDDPTT' as immunogenic linear B-cell epitopes while 'CPSRFGYFADPKDPH' and 'CPGNTRWNEDEETCT' were found to be the most suitable T-cell epitopes that interacted well with a large number of MHC II alleles. Both epitopes had high population coverage as well as showing a 100% conservancy. These five Der p 23 epitopes are useful for AIT vaccines and HDM allergy diagnosis development.
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spelling pubmed-56512242017-10-27 Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus Fanuel, Songwe Tabesh, Saeideh Sadroddiny, Esmaeil Kardar, Gholam Ali Bioinformation Hypothesis House dust mite (HDM) allergy is the leading cause of IgE-mediated hypersensitivity. Therefore identifying potential epitopes in the Dermatophagoide pteronyssinus 23 (Der p 23), a major house dust mite allergen will aid in the development of therapeutic vaccines and diagnostic kits for HDM allergy. Experimental methods of epitope discovery have been widely exploited for the mapping of potential allergens. This study sought to use immunoinformatic methods to analyze the structure of Der p 23 for potential immunoreactive B and T-cell epitopes that could be useful for AIT and allergy diagnosis. We retrieved a Der p 23 allergen sequence from Genbank database and then analyzed it using a combination of web-based sequence analysis tools including the Immune Epitope Database (IEDB), Protparam, BCPREDS, ABCpred, BepiPred, Bcepred among others to predict the physiochemical properties and epitope spectra of the Der p 23 allergen. We then built 3D models of the predicted B-cell epitopes, T cell epitopes and Der p 23 for sequence structure homology analysis. Our results identified peptides 'TRWNEDE', 'TVHPTTTEQPDDK', and 'NDDDPTT' as immunogenic linear B-cell epitopes while 'CPSRFGYFADPKDPH' and 'CPGNTRWNEDEETCT' were found to be the most suitable T-cell epitopes that interacted well with a large number of MHC II alleles. Both epitopes had high population coverage as well as showing a 100% conservancy. These five Der p 23 epitopes are useful for AIT vaccines and HDM allergy diagnosis development. Biomedical Informatics 2017-09-30 /pmc/articles/PMC5651224/ /pubmed/29081610 http://dx.doi.org/10.6026/97320630013307 Text en © 2017 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Fanuel, Songwe
Tabesh, Saeideh
Sadroddiny, Esmaeil
Kardar, Gholam Ali
Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title_full Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title_fullStr Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title_full_unstemmed Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title_short Analysis of predicted B and T-cell epitopes in Der p 23, allergen from Dermatophagoides pteronyssinus
title_sort analysis of predicted b and t-cell epitopes in der p 23, allergen from dermatophagoides pteronyssinus
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5651224/
https://www.ncbi.nlm.nih.gov/pubmed/29081610
http://dx.doi.org/10.6026/97320630013307
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