Cargando…
Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
[Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholder...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2017
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653948/ https://www.ncbi.nlm.nih.gov/pubmed/28937735 http://dx.doi.org/10.1021/acschembio.7b00687 |
_version_ | 1783273312980303872 |
---|---|
author | Horsman, Mark E. Marous, Daniel R. Li, Rongfeng Oliver, Ryan A. Byun, Byungjin Emrich, Scott J. Boggess, Bill Townsend, Craig A. Mobashery, Shahriar |
author_facet | Horsman, Mark E. Marous, Daniel R. Li, Rongfeng Oliver, Ryan A. Byun, Byungjin Emrich, Scott J. Boggess, Bill Townsend, Craig A. Mobashery, Shahriar |
author_sort | Horsman, Mark E. |
collection | PubMed |
description | [Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholderia ubonensis subsp. mesacidophila) is a taxonomically distinct producer of bulgecins with notable gene regions shared with Paraburkholderia acidophila. We use RAST multiple-gene comparison and MASH distancing with published genomes to order the draft contigs and identify unique gene regions for characterization. Forty-eight natural-product gene clusters are presented from PATRIC (RASTtk) and antiSMASH annotations. We present evidence that the 10 genes that follow the sulfazecin and isosulfazecin pathways in both species are likely involved in bulgecin A biosynthesis. |
format | Online Article Text |
id | pubmed-5653948 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-56539482017-10-26 Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster Horsman, Mark E. Marous, Daniel R. Li, Rongfeng Oliver, Ryan A. Byun, Byungjin Emrich, Scott J. Boggess, Bill Townsend, Craig A. Mobashery, Shahriar ACS Chem Biol [Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholderia ubonensis subsp. mesacidophila) is a taxonomically distinct producer of bulgecins with notable gene regions shared with Paraburkholderia acidophila. We use RAST multiple-gene comparison and MASH distancing with published genomes to order the draft contigs and identify unique gene regions for characterization. Forty-eight natural-product gene clusters are presented from PATRIC (RASTtk) and antiSMASH annotations. We present evidence that the 10 genes that follow the sulfazecin and isosulfazecin pathways in both species are likely involved in bulgecin A biosynthesis. American Chemical Society 2017-09-22 2017-10-20 /pmc/articles/PMC5653948/ /pubmed/28937735 http://dx.doi.org/10.1021/acschembio.7b00687 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Horsman, Mark E. Marous, Daniel R. Li, Rongfeng Oliver, Ryan A. Byun, Byungjin Emrich, Scott J. Boggess, Bill Townsend, Craig A. Mobashery, Shahriar Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster |
title | Whole-Genome Shotgun Sequencing of Two β-Proteobacterial
Species in Search of the Bulgecin Biosynthetic Cluster |
title_full | Whole-Genome Shotgun Sequencing of Two β-Proteobacterial
Species in Search of the Bulgecin Biosynthetic Cluster |
title_fullStr | Whole-Genome Shotgun Sequencing of Two β-Proteobacterial
Species in Search of the Bulgecin Biosynthetic Cluster |
title_full_unstemmed | Whole-Genome Shotgun Sequencing of Two β-Proteobacterial
Species in Search of the Bulgecin Biosynthetic Cluster |
title_short | Whole-Genome Shotgun Sequencing of Two β-Proteobacterial
Species in Search of the Bulgecin Biosynthetic Cluster |
title_sort | whole-genome shotgun sequencing of two β-proteobacterial
species in search of the bulgecin biosynthetic cluster |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653948/ https://www.ncbi.nlm.nih.gov/pubmed/28937735 http://dx.doi.org/10.1021/acschembio.7b00687 |
work_keys_str_mv | AT horsmanmarke wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT marousdanielr wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT lirongfeng wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT oliverryana wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT byunbyungjin wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT emrichscottj wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT boggessbill wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT townsendcraiga wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster AT mobasheryshahriar wholegenomeshotgunsequencingoftwobproteobacterialspeciesinsearchofthebulgecinbiosyntheticcluster |