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Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster

[Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholder...

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Autores principales: Horsman, Mark E., Marous, Daniel R., Li, Rongfeng, Oliver, Ryan A., Byun, Byungjin, Emrich, Scott J., Boggess, Bill, Townsend, Craig A., Mobashery, Shahriar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2017
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653948/
https://www.ncbi.nlm.nih.gov/pubmed/28937735
http://dx.doi.org/10.1021/acschembio.7b00687
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author Horsman, Mark E.
Marous, Daniel R.
Li, Rongfeng
Oliver, Ryan A.
Byun, Byungjin
Emrich, Scott J.
Boggess, Bill
Townsend, Craig A.
Mobashery, Shahriar
author_facet Horsman, Mark E.
Marous, Daniel R.
Li, Rongfeng
Oliver, Ryan A.
Byun, Byungjin
Emrich, Scott J.
Boggess, Bill
Townsend, Craig A.
Mobashery, Shahriar
author_sort Horsman, Mark E.
collection PubMed
description [Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholderia ubonensis subsp. mesacidophila) is a taxonomically distinct producer of bulgecins with notable gene regions shared with Paraburkholderia acidophila. We use RAST multiple-gene comparison and MASH distancing with published genomes to order the draft contigs and identify unique gene regions for characterization. Forty-eight natural-product gene clusters are presented from PATRIC (RASTtk) and antiSMASH annotations. We present evidence that the 10 genes that follow the sulfazecin and isosulfazecin pathways in both species are likely involved in bulgecin A biosynthesis.
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spelling pubmed-56539482017-10-26 Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster Horsman, Mark E. Marous, Daniel R. Li, Rongfeng Oliver, Ryan A. Byun, Byungjin Emrich, Scott J. Boggess, Bill Townsend, Craig A. Mobashery, Shahriar ACS Chem Biol [Image: see text] We have produced draft whole-genome sequences for two bacterial strains reported to produce the bulgecins as well as NRPS-derived monobactam β-lactam antibiotics. We propose classification of ATCC 31363 as Paraburkholderia acidophila. We further reaffirm that ATCC 31433 (Burkholderia ubonensis subsp. mesacidophila) is a taxonomically distinct producer of bulgecins with notable gene regions shared with Paraburkholderia acidophila. We use RAST multiple-gene comparison and MASH distancing with published genomes to order the draft contigs and identify unique gene regions for characterization. Forty-eight natural-product gene clusters are presented from PATRIC (RASTtk) and antiSMASH annotations. We present evidence that the 10 genes that follow the sulfazecin and isosulfazecin pathways in both species are likely involved in bulgecin A biosynthesis. American Chemical Society 2017-09-22 2017-10-20 /pmc/articles/PMC5653948/ /pubmed/28937735 http://dx.doi.org/10.1021/acschembio.7b00687 Text en Copyright © 2017 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Horsman, Mark E.
Marous, Daniel R.
Li, Rongfeng
Oliver, Ryan A.
Byun, Byungjin
Emrich, Scott J.
Boggess, Bill
Townsend, Craig A.
Mobashery, Shahriar
Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title_full Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title_fullStr Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title_full_unstemmed Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title_short Whole-Genome Shotgun Sequencing of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster
title_sort whole-genome shotgun sequencing of two β-proteobacterial species in search of the bulgecin biosynthetic cluster
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653948/
https://www.ncbi.nlm.nih.gov/pubmed/28937735
http://dx.doi.org/10.1021/acschembio.7b00687
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