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Dynamic classification using credible intervals in longitudinal discriminant analysis

Recently developed methods of longitudinal discriminant analysis allow for classification of subjects into prespecified prognostic groups using longitudinal history of both continuous and discrete biomarkers. The classification uses Bayesian estimates of the group membership probabilities for each p...

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Autores principales: Hughes, David M., Komárek, Arnošt, Bonnett, Laura J., Czanner, Gabriela, García‐Fiñana, Marta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5655752/
https://www.ncbi.nlm.nih.gov/pubmed/28762546
http://dx.doi.org/10.1002/sim.7397
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author Hughes, David M.
Komárek, Arnošt
Bonnett, Laura J.
Czanner, Gabriela
García‐Fiñana, Marta
author_facet Hughes, David M.
Komárek, Arnošt
Bonnett, Laura J.
Czanner, Gabriela
García‐Fiñana, Marta
author_sort Hughes, David M.
collection PubMed
description Recently developed methods of longitudinal discriminant analysis allow for classification of subjects into prespecified prognostic groups using longitudinal history of both continuous and discrete biomarkers. The classification uses Bayesian estimates of the group membership probabilities for each prognostic group. These estimates are derived from a multivariate generalised linear mixed model of the biomarker's longitudinal evolution in each of the groups and can be updated each time new data is available for a patient, providing a dynamic (over time) allocation scheme. However, the precision of the estimated group probabilities differs for each patient and also over time. This precision can be assessed by looking at credible intervals for the group membership probabilities. In this paper, we propose a new allocation rule that incorporates credible intervals for use in context of a dynamic longitudinal discriminant analysis and show that this can decrease the number of false positives in a prognostic test, improving the positive predictive value. We also establish that by leaving some patients unclassified for a certain period, the classification accuracy of those patients who are classified can be improved, giving increased confidence to clinicians in their decision making. Finally, we show that determining a stopping rule dynamically can be more accurate than specifying a set time point at which to decide on a patient's status. We illustrate our methodology using data from patients with epilepsy and show how patients who fail to achieve adequate seizure control are more accurately identified using credible intervals compared to existing methods.
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spelling pubmed-56557522017-11-01 Dynamic classification using credible intervals in longitudinal discriminant analysis Hughes, David M. Komárek, Arnošt Bonnett, Laura J. Czanner, Gabriela García‐Fiñana, Marta Stat Med Research Articles Recently developed methods of longitudinal discriminant analysis allow for classification of subjects into prespecified prognostic groups using longitudinal history of both continuous and discrete biomarkers. The classification uses Bayesian estimates of the group membership probabilities for each prognostic group. These estimates are derived from a multivariate generalised linear mixed model of the biomarker's longitudinal evolution in each of the groups and can be updated each time new data is available for a patient, providing a dynamic (over time) allocation scheme. However, the precision of the estimated group probabilities differs for each patient and also over time. This precision can be assessed by looking at credible intervals for the group membership probabilities. In this paper, we propose a new allocation rule that incorporates credible intervals for use in context of a dynamic longitudinal discriminant analysis and show that this can decrease the number of false positives in a prognostic test, improving the positive predictive value. We also establish that by leaving some patients unclassified for a certain period, the classification accuracy of those patients who are classified can be improved, giving increased confidence to clinicians in their decision making. Finally, we show that determining a stopping rule dynamically can be more accurate than specifying a set time point at which to decide on a patient's status. We illustrate our methodology using data from patients with epilepsy and show how patients who fail to achieve adequate seizure control are more accurately identified using credible intervals compared to existing methods. John Wiley and Sons Inc. 2017-08-01 2017-10-30 /pmc/articles/PMC5655752/ /pubmed/28762546 http://dx.doi.org/10.1002/sim.7397 Text en © 2017 The Authors. Statistics in Medicine Published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Hughes, David M.
Komárek, Arnošt
Bonnett, Laura J.
Czanner, Gabriela
García‐Fiñana, Marta
Dynamic classification using credible intervals in longitudinal discriminant analysis
title Dynamic classification using credible intervals in longitudinal discriminant analysis
title_full Dynamic classification using credible intervals in longitudinal discriminant analysis
title_fullStr Dynamic classification using credible intervals in longitudinal discriminant analysis
title_full_unstemmed Dynamic classification using credible intervals in longitudinal discriminant analysis
title_short Dynamic classification using credible intervals in longitudinal discriminant analysis
title_sort dynamic classification using credible intervals in longitudinal discriminant analysis
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5655752/
https://www.ncbi.nlm.nih.gov/pubmed/28762546
http://dx.doi.org/10.1002/sim.7397
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