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Rhorix: An interface between quantum chemical topology and the 3D graphics program blender
Chemical research is assisted by the creation of visual representations that map concepts (such as atoms and bonds) to 3D objects. These concepts are rooted in chemical theory that predates routine solution of the Schrödinger equation for systems of interesting size. The method of Quantum Chemical T...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5656898/ https://www.ncbi.nlm.nih.gov/pubmed/28857244 http://dx.doi.org/10.1002/jcc.25054 |
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author | Mills, Matthew J. L. Sale, Kenneth L. Simmons, Blake A. Popelier, Paul L. A. |
author_facet | Mills, Matthew J. L. Sale, Kenneth L. Simmons, Blake A. Popelier, Paul L. A. |
author_sort | Mills, Matthew J. L. |
collection | PubMed |
description | Chemical research is assisted by the creation of visual representations that map concepts (such as atoms and bonds) to 3D objects. These concepts are rooted in chemical theory that predates routine solution of the Schrödinger equation for systems of interesting size. The method of Quantum Chemical Topology (QCT) provides an alternative, parameter‐free means to understand chemical phenomena directly from quantum mechanical principles. Representation of the topological elements of QCT has lagged behind the best tools available. Here, we describe a general abstraction (and corresponding file format) that permits the definition of mappings between topological objects and their 3D representations. Possible mappings are discussed and a canonical example is suggested, which has been implemented as a Python “Add‐On” named Rhorix for the state‐of‐the‐art 3D modeling program Blender. This allows chemists to use modern drawing tools and artists to access QCT data in a familiar context. A number of examples are discussed. © 2017 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc. |
format | Online Article Text |
id | pubmed-5656898 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-56568982017-11-01 Rhorix: An interface between quantum chemical topology and the 3D graphics program blender Mills, Matthew J. L. Sale, Kenneth L. Simmons, Blake A. Popelier, Paul L. A. J Comput Chem Software News and Updates Chemical research is assisted by the creation of visual representations that map concepts (such as atoms and bonds) to 3D objects. These concepts are rooted in chemical theory that predates routine solution of the Schrödinger equation for systems of interesting size. The method of Quantum Chemical Topology (QCT) provides an alternative, parameter‐free means to understand chemical phenomena directly from quantum mechanical principles. Representation of the topological elements of QCT has lagged behind the best tools available. Here, we describe a general abstraction (and corresponding file format) that permits the definition of mappings between topological objects and their 3D representations. Possible mappings are discussed and a canonical example is suggested, which has been implemented as a Python “Add‐On” named Rhorix for the state‐of‐the‐art 3D modeling program Blender. This allows chemists to use modern drawing tools and artists to access QCT data in a familiar context. A number of examples are discussed. © 2017 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc. John Wiley and Sons Inc. 2017-08-31 2017-11-05 /pmc/articles/PMC5656898/ /pubmed/28857244 http://dx.doi.org/10.1002/jcc.25054 Text en © 2017 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software News and Updates Mills, Matthew J. L. Sale, Kenneth L. Simmons, Blake A. Popelier, Paul L. A. Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title | Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title_full | Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title_fullStr | Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title_full_unstemmed | Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title_short | Rhorix: An interface between quantum chemical topology and the 3D graphics program blender |
title_sort | rhorix: an interface between quantum chemical topology and the 3d graphics program blender |
topic | Software News and Updates |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5656898/ https://www.ncbi.nlm.nih.gov/pubmed/28857244 http://dx.doi.org/10.1002/jcc.25054 |
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