First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza

Oryza coarctata plant, collected from Sundarban delta of West Bengal, India,  has been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time the d...

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Detalles Bibliográficos
Autores principales: Mondal, Tapan Kumar, Rawal, Hukam Chand, Gaikwad, Kishor, Sharma, Tilak Raj, Singh, Nagendra Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2017
Materias:
Data Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657017/
https://www.ncbi.nlm.nih.gov/pubmed/29123646
http://dx.doi.org/10.12688/f1000research.12414.2
Descripción
Sumario:Oryza coarctata plant, collected from Sundarban delta of West Bengal, India,  has been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time the draft genome with the coverage of 85.71 %  and  deposited the raw data in NCBI SRA, with BioProject ID PRJNA396417.

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