First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza

Oryza coarctata plant, collected from Sundarban delta of West Bengal, India,  has been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time the d...

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Autores principales: Mondal, Tapan Kumar, Rawal, Hukam Chand, Gaikwad, Kishor, Sharma, Tilak Raj, Singh, Nagendra Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2017
Materias:
Data Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657017/
https://www.ncbi.nlm.nih.gov/pubmed/29123646
http://dx.doi.org/10.12688/f1000research.12414.2
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author Mondal, Tapan Kumar
Rawal, Hukam Chand
Gaikwad, Kishor
Sharma, Tilak Raj
Singh, Nagendra Kumar
author_facet Mondal, Tapan Kumar
Rawal, Hukam Chand
Gaikwad, Kishor
Sharma, Tilak Raj
Singh, Nagendra Kumar
author_sort Mondal, Tapan Kumar
collection PubMed
description Oryza coarctata plant, collected from Sundarban delta of West Bengal, India,  has been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time the draft genome with the coverage of 85.71 %  and  deposited the raw data in NCBI SRA, with BioProject ID PRJNA396417.
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spelling pubmed-56570172017-11-08 First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza Mondal, Tapan Kumar Rawal, Hukam Chand Gaikwad, Kishor Sharma, Tilak Raj Singh, Nagendra Kumar F1000Res Data Note Oryza coarctata plant, collected from Sundarban delta of West Bengal, India,  has been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time the draft genome with the coverage of 85.71 %  and  deposited the raw data in NCBI SRA, with BioProject ID PRJNA396417. F1000 Research Limited 2017-12-15 /pmc/articles/PMC5657017/ /pubmed/29123646 http://dx.doi.org/10.12688/f1000research.12414.2 Text en Copyright: © 2017 Mondal TK et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Mondal, Tapan Kumar
Rawal, Hukam Chand
Gaikwad, Kishor
Sharma, Tilak Raj
Singh, Nagendra Kumar
First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title_full First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title_fullStr First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title_full_unstemmed First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title_short First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
title_sort first de novo draft genome sequence of oryza coarctata, the only halophytic species in the genus oryza
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657017/
https://www.ncbi.nlm.nih.gov/pubmed/29123646
http://dx.doi.org/10.12688/f1000research.12414.2
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