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BeerDeCoded: the open beer metagenome project

Next generation sequencing has radically changed research in the life sciences, in both academic and corporate laboratories. The potential impact is tremendous, yet a majority of citizens have little or no understanding of the technological and ethical aspects of this widespread adoption. We designe...

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Detalles Bibliográficos
Autores principales: Sobel, Jonathan, Henry, Luc, Rotman, Nicolas, Rando, Gianpaolo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657021/
https://www.ncbi.nlm.nih.gov/pubmed/29123645
http://dx.doi.org/10.12688/f1000research.12564.2
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author Sobel, Jonathan
Henry, Luc
Rotman, Nicolas
Rando, Gianpaolo
author_facet Sobel, Jonathan
Henry, Luc
Rotman, Nicolas
Rando, Gianpaolo
author_sort Sobel, Jonathan
collection PubMed
description Next generation sequencing has radically changed research in the life sciences, in both academic and corporate laboratories. The potential impact is tremendous, yet a majority of citizens have little or no understanding of the technological and ethical aspects of this widespread adoption. We designed BeerDeCoded as a pretext to discuss the societal issues related to genomic and metagenomic data with fellow citizens, while advancing scientific knowledge of the most popular beverage of all. In the spirit of citizen science, sample collection and DNA extraction were carried out with the participation of non-scientists in the community laboratory of Hackuarium, a not-for-profit organisation that supports unconventional research and promotes the public understanding of science. The dataset presented herein contains the targeted metagenomic profile of 39 bottled beers from 5 countries, based on internal transcribed spacer (ITS) sequencing of fungal species. A preliminary analysis reveals the presence of a large diversity of wild yeast species in commercial brews. With this project, we demonstrate that coupling simple laboratory procedures that can be carried out in a non-professional environment with state-of-the-art sequencing technologies and targeted metagenomic analyses, can lead to the detection and identification of the microbial content in bottled beer.
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spelling pubmed-56570212017-11-08 BeerDeCoded: the open beer metagenome project Sobel, Jonathan Henry, Luc Rotman, Nicolas Rando, Gianpaolo F1000Res Data Note Next generation sequencing has radically changed research in the life sciences, in both academic and corporate laboratories. The potential impact is tremendous, yet a majority of citizens have little or no understanding of the technological and ethical aspects of this widespread adoption. We designed BeerDeCoded as a pretext to discuss the societal issues related to genomic and metagenomic data with fellow citizens, while advancing scientific knowledge of the most popular beverage of all. In the spirit of citizen science, sample collection and DNA extraction were carried out with the participation of non-scientists in the community laboratory of Hackuarium, a not-for-profit organisation that supports unconventional research and promotes the public understanding of science. The dataset presented herein contains the targeted metagenomic profile of 39 bottled beers from 5 countries, based on internal transcribed spacer (ITS) sequencing of fungal species. A preliminary analysis reveals the presence of a large diversity of wild yeast species in commercial brews. With this project, we demonstrate that coupling simple laboratory procedures that can be carried out in a non-professional environment with state-of-the-art sequencing technologies and targeted metagenomic analyses, can lead to the detection and identification of the microbial content in bottled beer. F1000 Research Limited 2017-10-20 /pmc/articles/PMC5657021/ /pubmed/29123645 http://dx.doi.org/10.12688/f1000research.12564.2 Text en Copyright: © 2017 Sobel J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Sobel, Jonathan
Henry, Luc
Rotman, Nicolas
Rando, Gianpaolo
BeerDeCoded: the open beer metagenome project
title BeerDeCoded: the open beer metagenome project
title_full BeerDeCoded: the open beer metagenome project
title_fullStr BeerDeCoded: the open beer metagenome project
title_full_unstemmed BeerDeCoded: the open beer metagenome project
title_short BeerDeCoded: the open beer metagenome project
title_sort beerdecoded: the open beer metagenome project
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657021/
https://www.ncbi.nlm.nih.gov/pubmed/29123645
http://dx.doi.org/10.12688/f1000research.12564.2
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