Cargando…
Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signature...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660189/ https://www.ncbi.nlm.nih.gov/pubmed/29079844 http://dx.doi.org/10.1038/s41598-017-14196-0 |
_version_ | 1783274250578165760 |
---|---|
author | Choi, Kyung-Min Jung, Jaehoon Cho, Young Min Kim, Kwondo Kim, Mi-Gyeong Kim, Jinho Kim, Huibae Shin, Hee Jung Kim, Hae Deun Chung, Seung-Tae Cho, Seoae Chung, Myeon-Woo |
author_facet | Choi, Kyung-Min Jung, Jaehoon Cho, Young Min Kim, Kwondo Kim, Mi-Gyeong Kim, Jinho Kim, Huibae Shin, Hee Jung Kim, Hae Deun Chung, Seung-Tae Cho, Seoae Chung, Myeon-Woo |
author_sort | Choi, Kyung-Min |
collection | PubMed |
description | In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signatures are crucial to understanding the genomic basis of a population and to identify specific patterns of evolutionary change. In this study, we investigated the underlying genetic profiles of a newly developed mouse strain, C57BL/6NKorl (Korl), established through sibling mating over 30 generations. To analyse the distinctive genomic features of Korl mice, we used whole-genome sequencing from six samples, which were compared to those of other C57BL/6N-based mouse strains. Korl strain-specific polymorphisms were identified and signatures of a selective sweep were detected. In particular, the candidate genes related to the increased body weight of the Korl strain were identified. Establishment of the genetic profile of Korl mice can provide insight into the inbreeding-induced changes to the gene pool, and help to establish this strain as a useful model for practical and targeted research purposes. |
format | Online Article Text |
id | pubmed-5660189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56601892017-11-01 Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight Choi, Kyung-Min Jung, Jaehoon Cho, Young Min Kim, Kwondo Kim, Mi-Gyeong Kim, Jinho Kim, Huibae Shin, Hee Jung Kim, Hae Deun Chung, Seung-Tae Cho, Seoae Chung, Myeon-Woo Sci Rep Article In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signatures are crucial to understanding the genomic basis of a population and to identify specific patterns of evolutionary change. In this study, we investigated the underlying genetic profiles of a newly developed mouse strain, C57BL/6NKorl (Korl), established through sibling mating over 30 generations. To analyse the distinctive genomic features of Korl mice, we used whole-genome sequencing from six samples, which were compared to those of other C57BL/6N-based mouse strains. Korl strain-specific polymorphisms were identified and signatures of a selective sweep were detected. In particular, the candidate genes related to the increased body weight of the Korl strain were identified. Establishment of the genetic profile of Korl mice can provide insight into the inbreeding-induced changes to the gene pool, and help to establish this strain as a useful model for practical and targeted research purposes. Nature Publishing Group UK 2017-10-27 /pmc/articles/PMC5660189/ /pubmed/29079844 http://dx.doi.org/10.1038/s41598-017-14196-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Choi, Kyung-Min Jung, Jaehoon Cho, Young Min Kim, Kwondo Kim, Mi-Gyeong Kim, Jinho Kim, Huibae Shin, Hee Jung Kim, Hae Deun Chung, Seung-Tae Cho, Seoae Chung, Myeon-Woo Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title | Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title_full | Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title_fullStr | Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title_full_unstemmed | Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title_short | Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight |
title_sort | genetic and phenotypic characterization of the novel mouse substrain c57bl/6n korl with increased body weight |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660189/ https://www.ncbi.nlm.nih.gov/pubmed/29079844 http://dx.doi.org/10.1038/s41598-017-14196-0 |
work_keys_str_mv | AT choikyungmin geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT jungjaehoon geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT choyoungmin geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT kimkwondo geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT kimmigyeong geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT kimjinho geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT kimhuibae geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT shinheejung geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT kimhaedeun geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT chungseungtae geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT choseoae geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight AT chungmyeonwoo geneticandphenotypiccharacterizationofthenovelmousesubstrainc57bl6nkorlwithincreasedbodyweight |