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Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight

In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signature...

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Autores principales: Choi, Kyung-Min, Jung, Jaehoon, Cho, Young Min, Kim, Kwondo, Kim, Mi-Gyeong, Kim, Jinho, Kim, Huibae, Shin, Hee Jung, Kim, Hae Deun, Chung, Seung-Tae, Cho, Seoae, Chung, Myeon-Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660189/
https://www.ncbi.nlm.nih.gov/pubmed/29079844
http://dx.doi.org/10.1038/s41598-017-14196-0
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author Choi, Kyung-Min
Jung, Jaehoon
Cho, Young Min
Kim, Kwondo
Kim, Mi-Gyeong
Kim, Jinho
Kim, Huibae
Shin, Hee Jung
Kim, Hae Deun
Chung, Seung-Tae
Cho, Seoae
Chung, Myeon-Woo
author_facet Choi, Kyung-Min
Jung, Jaehoon
Cho, Young Min
Kim, Kwondo
Kim, Mi-Gyeong
Kim, Jinho
Kim, Huibae
Shin, Hee Jung
Kim, Hae Deun
Chung, Seung-Tae
Cho, Seoae
Chung, Myeon-Woo
author_sort Choi, Kyung-Min
collection PubMed
description In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signatures are crucial to understanding the genomic basis of a population and to identify specific patterns of evolutionary change. In this study, we investigated the underlying genetic profiles of a newly developed mouse strain, C57BL/6NKorl (Korl), established through sibling mating over 30 generations. To analyse the distinctive genomic features of Korl mice, we used whole-genome sequencing from six samples, which were compared to those of other C57BL/6N-based mouse strains. Korl strain-specific polymorphisms were identified and signatures of a selective sweep were detected. In particular, the candidate genes related to the increased body weight of the Korl strain were identified. Establishment of the genetic profile of Korl mice can provide insight into the inbreeding-induced changes to the gene pool, and help to establish this strain as a useful model for practical and targeted research purposes.
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spelling pubmed-56601892017-11-01 Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight Choi, Kyung-Min Jung, Jaehoon Cho, Young Min Kim, Kwondo Kim, Mi-Gyeong Kim, Jinho Kim, Huibae Shin, Hee Jung Kim, Hae Deun Chung, Seung-Tae Cho, Seoae Chung, Myeon-Woo Sci Rep Article In inbred mouse lines, there is generally little genetic difference between individuals. This small genetic variability facilitates carrying out research on minute changes of various traits and the gene pool. Also, characterizing the diversity and detecting selective genetic and phenotypic signatures are crucial to understanding the genomic basis of a population and to identify specific patterns of evolutionary change. In this study, we investigated the underlying genetic profiles of a newly developed mouse strain, C57BL/6NKorl (Korl), established through sibling mating over 30 generations. To analyse the distinctive genomic features of Korl mice, we used whole-genome sequencing from six samples, which were compared to those of other C57BL/6N-based mouse strains. Korl strain-specific polymorphisms were identified and signatures of a selective sweep were detected. In particular, the candidate genes related to the increased body weight of the Korl strain were identified. Establishment of the genetic profile of Korl mice can provide insight into the inbreeding-induced changes to the gene pool, and help to establish this strain as a useful model for practical and targeted research purposes. Nature Publishing Group UK 2017-10-27 /pmc/articles/PMC5660189/ /pubmed/29079844 http://dx.doi.org/10.1038/s41598-017-14196-0 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Choi, Kyung-Min
Jung, Jaehoon
Cho, Young Min
Kim, Kwondo
Kim, Mi-Gyeong
Kim, Jinho
Kim, Huibae
Shin, Hee Jung
Kim, Hae Deun
Chung, Seung-Tae
Cho, Seoae
Chung, Myeon-Woo
Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title_full Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title_fullStr Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title_full_unstemmed Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title_short Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
title_sort genetic and phenotypic characterization of the novel mouse substrain c57bl/6n korl with increased body weight
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660189/
https://www.ncbi.nlm.nih.gov/pubmed/29079844
http://dx.doi.org/10.1038/s41598-017-14196-0
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