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Analyzing microtomography data with Python and the scikit-image library

The exploration and processing of images is a vital aspect of the scientific workflows of many X-ray imaging modalities. Users require tools that combine interactivity, versatility, and performance. scikit-image is an open-source image processing toolkit for the Python language that supports a large...

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Detalles Bibliográficos
Autores principales: Gouillart, Emmanuelle, Nunez-Iglesias, Juan, van der Walt, Stéfan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660892/
https://www.ncbi.nlm.nih.gov/pubmed/29142808
http://dx.doi.org/10.1186/s40679-016-0031-0
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author Gouillart, Emmanuelle
Nunez-Iglesias, Juan
van der Walt, Stéfan
author_facet Gouillart, Emmanuelle
Nunez-Iglesias, Juan
van der Walt, Stéfan
author_sort Gouillart, Emmanuelle
collection PubMed
description The exploration and processing of images is a vital aspect of the scientific workflows of many X-ray imaging modalities. Users require tools that combine interactivity, versatility, and performance. scikit-image is an open-source image processing toolkit for the Python language that supports a large variety of file formats and is compatible with 2D and 3D images. The toolkit exposes a simple programming interface, with thematic modules grouping functions according to their purpose, such as image restoration, segmentation, and measurements. scikit-image users benefit from a rich scientific Python ecosystem that contains many powerful libraries for tasks such as visualization or machine learning. scikit-image combines a gentle learning curve, versatile image processing capabilities, and the scalable performance required for the high-throughput analysis of X-ray imaging data.
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spelling pubmed-56608922017-11-13 Analyzing microtomography data with Python and the scikit-image library Gouillart, Emmanuelle Nunez-Iglesias, Juan van der Walt, Stéfan Adv Struct Chem Imaging Research The exploration and processing of images is a vital aspect of the scientific workflows of many X-ray imaging modalities. Users require tools that combine interactivity, versatility, and performance. scikit-image is an open-source image processing toolkit for the Python language that supports a large variety of file formats and is compatible with 2D and 3D images. The toolkit exposes a simple programming interface, with thematic modules grouping functions according to their purpose, such as image restoration, segmentation, and measurements. scikit-image users benefit from a rich scientific Python ecosystem that contains many powerful libraries for tasks such as visualization or machine learning. scikit-image combines a gentle learning curve, versatile image processing capabilities, and the scalable performance required for the high-throughput analysis of X-ray imaging data. Springer International Publishing 2016-12-07 2017 /pmc/articles/PMC5660892/ /pubmed/29142808 http://dx.doi.org/10.1186/s40679-016-0031-0 Text en © The Author(s) 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Research
Gouillart, Emmanuelle
Nunez-Iglesias, Juan
van der Walt, Stéfan
Analyzing microtomography data with Python and the scikit-image library
title Analyzing microtomography data with Python and the scikit-image library
title_full Analyzing microtomography data with Python and the scikit-image library
title_fullStr Analyzing microtomography data with Python and the scikit-image library
title_full_unstemmed Analyzing microtomography data with Python and the scikit-image library
title_short Analyzing microtomography data with Python and the scikit-image library
title_sort analyzing microtomography data with python and the scikit-image library
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660892/
https://www.ncbi.nlm.nih.gov/pubmed/29142808
http://dx.doi.org/10.1186/s40679-016-0031-0
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