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Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation

Accurate lung nodule segmentation from computed tomography (CT) images is of great importance for image-driven lung cancer analysis. However, the heterogeneity of lung nodules and the presence of similar visual characteristics between nodules and their surroundings make it difficult for robust nodul...

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Autores principales: Wang, Shuo, Zhou, Mu, Liu, Zaiyi, Liu, Zhenyu, Gu, Dongsheng, Zang, Yali, Dong, Di, Gevaert, Olivier, Tian, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5661888/
https://www.ncbi.nlm.nih.gov/pubmed/28688283
http://dx.doi.org/10.1016/j.media.2017.06.014
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author Wang, Shuo
Zhou, Mu
Liu, Zaiyi
Liu, Zhenyu
Gu, Dongsheng
Zang, Yali
Dong, Di
Gevaert, Olivier
Tian, Jie
author_facet Wang, Shuo
Zhou, Mu
Liu, Zaiyi
Liu, Zhenyu
Gu, Dongsheng
Zang, Yali
Dong, Di
Gevaert, Olivier
Tian, Jie
author_sort Wang, Shuo
collection PubMed
description Accurate lung nodule segmentation from computed tomography (CT) images is of great importance for image-driven lung cancer analysis. However, the heterogeneity of lung nodules and the presence of similar visual characteristics between nodules and their surroundings make it difficult for robust nodule segmentation. In this study, we propose a data-driven model, termed the Central Focused Convolutional Neural Networks (CF-CNN), to segment lung nodules from heterogeneous CT images. Our approach combines two key insights: 1) the proposed model captures a diverse set of nodule-sensitive features from both 3-D and 2-D CT images simultaneously; 2) when classifying an image voxel, the effects of its neighbor voxels can vary according to their spatial locations. We describe this phenomenon by proposing a novel central pooling layer retaining much information on voxel patch center, followed by a multi-scale patch learning strategy. Moreover, we design a weighted sampling to facilitate the model training, where training samples are selected according to their degree of segmentation difficulty. The proposed method has been extensively evaluated on the public LIDC dataset including 893 nodules and an independent dataset with 74 nodules from Guangdong General Hospital (GDGH). We showed that CF-CNN achieved superior segmentation performance with average dice scores of 82.15% and 80.02% for the two datasets respectively. Moreover, we compared our results with the inter-radiologists consistency on LIDC dataset, showing a difference in average dice score of only 1.98%.
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spelling pubmed-56618882017-10-30 Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation Wang, Shuo Zhou, Mu Liu, Zaiyi Liu, Zhenyu Gu, Dongsheng Zang, Yali Dong, Di Gevaert, Olivier Tian, Jie Med Image Anal Article Accurate lung nodule segmentation from computed tomography (CT) images is of great importance for image-driven lung cancer analysis. However, the heterogeneity of lung nodules and the presence of similar visual characteristics between nodules and their surroundings make it difficult for robust nodule segmentation. In this study, we propose a data-driven model, termed the Central Focused Convolutional Neural Networks (CF-CNN), to segment lung nodules from heterogeneous CT images. Our approach combines two key insights: 1) the proposed model captures a diverse set of nodule-sensitive features from both 3-D and 2-D CT images simultaneously; 2) when classifying an image voxel, the effects of its neighbor voxels can vary according to their spatial locations. We describe this phenomenon by proposing a novel central pooling layer retaining much information on voxel patch center, followed by a multi-scale patch learning strategy. Moreover, we design a weighted sampling to facilitate the model training, where training samples are selected according to their degree of segmentation difficulty. The proposed method has been extensively evaluated on the public LIDC dataset including 893 nodules and an independent dataset with 74 nodules from Guangdong General Hospital (GDGH). We showed that CF-CNN achieved superior segmentation performance with average dice scores of 82.15% and 80.02% for the two datasets respectively. Moreover, we compared our results with the inter-radiologists consistency on LIDC dataset, showing a difference in average dice score of only 1.98%. 2017-06-30 2017-08 /pmc/articles/PMC5661888/ /pubmed/28688283 http://dx.doi.org/10.1016/j.media.2017.06.014 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license. (http://creativecommons.org/licenses/by/4.0/)
spellingShingle Article
Wang, Shuo
Zhou, Mu
Liu, Zaiyi
Liu, Zhenyu
Gu, Dongsheng
Zang, Yali
Dong, Di
Gevaert, Olivier
Tian, Jie
Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title_full Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title_fullStr Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title_full_unstemmed Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title_short Central focused convolutional neural networks: Developing a data-driven model for lung nodule segmentation
title_sort central focused convolutional neural networks: developing a data-driven model for lung nodule segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5661888/
https://www.ncbi.nlm.nih.gov/pubmed/28688283
http://dx.doi.org/10.1016/j.media.2017.06.014
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