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A compendium of multi-omic sequence information from the Saanich Inlet water column

Marine oxygen minimum zones (OMZs) are widespread regions of the ocean that are currently expanding due to global warming. While inhospitable to most metazoans, OMZs are hotspots for microbial mediated biogeochemical cycling of carbon, nitrogen and sulphur, contributing disproportionately to marine...

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Autores principales: Hawley, Alyse K., Torres-Beltrán, Mónica, Zaikova, Elena, Walsh, David A., Mueller, Andreas, Scofield, Melanie, Kheirandish, Sam, Payne, Chris, Pakhomova, Larysa, Bhatia, Maya, Shevchuk, Olena, Gies, Esther A., Fairley, Diane, Malfatti, Stephanie A., Norbeck, Angela D., Brewer, Heather M., Pasa-Tolic, Ljiljana, del Rio, Tijana Glavina, Suttle, Curtis A., Tringe, Susannah, Hallam, Steven J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663217/
https://www.ncbi.nlm.nih.gov/pubmed/29087368
http://dx.doi.org/10.1038/sdata.2017.160
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author Hawley, Alyse K.
Torres-Beltrán, Mónica
Zaikova, Elena
Walsh, David A.
Mueller, Andreas
Scofield, Melanie
Kheirandish, Sam
Payne, Chris
Pakhomova, Larysa
Bhatia, Maya
Shevchuk, Olena
Gies, Esther A.
Fairley, Diane
Malfatti, Stephanie A.
Norbeck, Angela D.
Brewer, Heather M.
Pasa-Tolic, Ljiljana
del Rio, Tijana Glavina
Suttle, Curtis A.
Tringe, Susannah
Hallam, Steven J.
author_facet Hawley, Alyse K.
Torres-Beltrán, Mónica
Zaikova, Elena
Walsh, David A.
Mueller, Andreas
Scofield, Melanie
Kheirandish, Sam
Payne, Chris
Pakhomova, Larysa
Bhatia, Maya
Shevchuk, Olena
Gies, Esther A.
Fairley, Diane
Malfatti, Stephanie A.
Norbeck, Angela D.
Brewer, Heather M.
Pasa-Tolic, Ljiljana
del Rio, Tijana Glavina
Suttle, Curtis A.
Tringe, Susannah
Hallam, Steven J.
author_sort Hawley, Alyse K.
collection PubMed
description Marine oxygen minimum zones (OMZs) are widespread regions of the ocean that are currently expanding due to global warming. While inhospitable to most metazoans, OMZs are hotspots for microbial mediated biogeochemical cycling of carbon, nitrogen and sulphur, contributing disproportionately to marine nitrogen loss and climate active trace gas production. Our current understanding of microbial community responses to OMZ expansion is limited by a lack of time-resolved data sets linking multi-omic sequence information (DNA, RNA, protein) to geochemical parameters and process rates. Here, we present six years of time-resolved multi-omic observations in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia, Canada that undergoes recurring changes in water column oxygenation status. This compendium provides a unique multi-omic framework for studying microbial community responses to ocean deoxygenation along defined geochemical gradients in OMZ waters.
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spelling pubmed-56632172017-11-03 A compendium of multi-omic sequence information from the Saanich Inlet water column Hawley, Alyse K. Torres-Beltrán, Mónica Zaikova, Elena Walsh, David A. Mueller, Andreas Scofield, Melanie Kheirandish, Sam Payne, Chris Pakhomova, Larysa Bhatia, Maya Shevchuk, Olena Gies, Esther A. Fairley, Diane Malfatti, Stephanie A. Norbeck, Angela D. Brewer, Heather M. Pasa-Tolic, Ljiljana del Rio, Tijana Glavina Suttle, Curtis A. Tringe, Susannah Hallam, Steven J. Sci Data Data Descriptor Marine oxygen minimum zones (OMZs) are widespread regions of the ocean that are currently expanding due to global warming. While inhospitable to most metazoans, OMZs are hotspots for microbial mediated biogeochemical cycling of carbon, nitrogen and sulphur, contributing disproportionately to marine nitrogen loss and climate active trace gas production. Our current understanding of microbial community responses to OMZ expansion is limited by a lack of time-resolved data sets linking multi-omic sequence information (DNA, RNA, protein) to geochemical parameters and process rates. Here, we present six years of time-resolved multi-omic observations in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia, Canada that undergoes recurring changes in water column oxygenation status. This compendium provides a unique multi-omic framework for studying microbial community responses to ocean deoxygenation along defined geochemical gradients in OMZ waters. Nature Publishing Group 2017-10-31 /pmc/articles/PMC5663217/ /pubmed/29087368 http://dx.doi.org/10.1038/sdata.2017.160 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Hawley, Alyse K.
Torres-Beltrán, Mónica
Zaikova, Elena
Walsh, David A.
Mueller, Andreas
Scofield, Melanie
Kheirandish, Sam
Payne, Chris
Pakhomova, Larysa
Bhatia, Maya
Shevchuk, Olena
Gies, Esther A.
Fairley, Diane
Malfatti, Stephanie A.
Norbeck, Angela D.
Brewer, Heather M.
Pasa-Tolic, Ljiljana
del Rio, Tijana Glavina
Suttle, Curtis A.
Tringe, Susannah
Hallam, Steven J.
A compendium of multi-omic sequence information from the Saanich Inlet water column
title A compendium of multi-omic sequence information from the Saanich Inlet water column
title_full A compendium of multi-omic sequence information from the Saanich Inlet water column
title_fullStr A compendium of multi-omic sequence information from the Saanich Inlet water column
title_full_unstemmed A compendium of multi-omic sequence information from the Saanich Inlet water column
title_short A compendium of multi-omic sequence information from the Saanich Inlet water column
title_sort compendium of multi-omic sequence information from the saanich inlet water column
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663217/
https://www.ncbi.nlm.nih.gov/pubmed/29087368
http://dx.doi.org/10.1038/sdata.2017.160
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