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Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?

OBJECTIVES: With the development of next-generation sequencing (NGS) technologies, DNA sequencing has been increasingly utilized in clinical practice. Our goal was to investigate the impact of genomic evaluation on treatment decisions for heavily pretreated patients with metastatic cancer. METHODS:...

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Autores principales: Fernandes, Gustavo S., Marques, Daniel F., Girardi, Daniel M., Braghiroli, Maria Ignez F., Coudry, Renata A., Meireles, Sibele I., Katz, Artur, Hoff, Paulo M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5666438/
https://www.ncbi.nlm.nih.gov/pubmed/29160420
http://dx.doi.org/10.6061/clinics/2017(10)01
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author Fernandes, Gustavo S.
Marques, Daniel F.
Girardi, Daniel M.
Braghiroli, Maria Ignez F.
Coudry, Renata A.
Meireles, Sibele I.
Katz, Artur
Hoff, Paulo M.
author_facet Fernandes, Gustavo S.
Marques, Daniel F.
Girardi, Daniel M.
Braghiroli, Maria Ignez F.
Coudry, Renata A.
Meireles, Sibele I.
Katz, Artur
Hoff, Paulo M.
author_sort Fernandes, Gustavo S.
collection PubMed
description OBJECTIVES: With the development of next-generation sequencing (NGS) technologies, DNA sequencing has been increasingly utilized in clinical practice. Our goal was to investigate the impact of genomic evaluation on treatment decisions for heavily pretreated patients with metastatic cancer. METHODS: We analyzed metastatic cancer patients from a single institution whose cancers had progressed after all available standard-of-care therapies and whose tumors underwent next-generation sequencing analysis. We determined the percentage of patients who received any therapy directed by the test, and its efficacy. RESULTS: From July 2013 to December 2015, 185 consecutive patients were tested using a commercially available next-generation sequencing-based test, and 157 patients were eligible. Sixty-six patients (42.0%) were female, and 91 (58.0%) were male. The mean age at diagnosis was 52.2 years, and the mean number of pre-test lines of systemic treatment was 2.7. One hundred and seventy-seven patients (95.6%) had at least one identified gene alteration. Twenty-four patients (15.2%) underwent systemic treatment directed by the test result. Of these, one patient had a complete response, four (16.7%) had partial responses, two (8.3%) had stable disease, and 17 (70.8%) had disease progression as the best result. The median progression-free survival time with matched therapy was 1.6 months, and the median overall survival was 10 months. CONCLUSION: We identified a high prevalence of gene alterations using an next-generation sequencing test. Although some benefit was associated with the matched therapy, most of the patients had disease progression as the best response, indicating the limited biological potential and unclear clinical relevance of this practice.
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spelling pubmed-56664382017-11-07 Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care? Fernandes, Gustavo S. Marques, Daniel F. Girardi, Daniel M. Braghiroli, Maria Ignez F. Coudry, Renata A. Meireles, Sibele I. Katz, Artur Hoff, Paulo M. Clinics (Sao Paulo) Clinical Science OBJECTIVES: With the development of next-generation sequencing (NGS) technologies, DNA sequencing has been increasingly utilized in clinical practice. Our goal was to investigate the impact of genomic evaluation on treatment decisions for heavily pretreated patients with metastatic cancer. METHODS: We analyzed metastatic cancer patients from a single institution whose cancers had progressed after all available standard-of-care therapies and whose tumors underwent next-generation sequencing analysis. We determined the percentage of patients who received any therapy directed by the test, and its efficacy. RESULTS: From July 2013 to December 2015, 185 consecutive patients were tested using a commercially available next-generation sequencing-based test, and 157 patients were eligible. Sixty-six patients (42.0%) were female, and 91 (58.0%) were male. The mean age at diagnosis was 52.2 years, and the mean number of pre-test lines of systemic treatment was 2.7. One hundred and seventy-seven patients (95.6%) had at least one identified gene alteration. Twenty-four patients (15.2%) underwent systemic treatment directed by the test result. Of these, one patient had a complete response, four (16.7%) had partial responses, two (8.3%) had stable disease, and 17 (70.8%) had disease progression as the best result. The median progression-free survival time with matched therapy was 1.6 months, and the median overall survival was 10 months. CONCLUSION: We identified a high prevalence of gene alterations using an next-generation sequencing test. Although some benefit was associated with the matched therapy, most of the patients had disease progression as the best response, indicating the limited biological potential and unclear clinical relevance of this practice. Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo 2017-10 2017-10 /pmc/articles/PMC5666438/ /pubmed/29160420 http://dx.doi.org/10.6061/clinics/2017(10)01 Text en Copyright © 2017 CLINICS http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by/4.0/) which permits unrestricted use, distribution, and reproduction in any medium or format, provided the original work is properly cited.
spellingShingle Clinical Science
Fernandes, Gustavo S.
Marques, Daniel F.
Girardi, Daniel M.
Braghiroli, Maria Ignez F.
Coudry, Renata A.
Meireles, Sibele I.
Katz, Artur
Hoff, Paulo M.
Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title_full Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title_fullStr Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title_full_unstemmed Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title_short Next-generation Sequencing-based genomic profiling: Fostering innovation in cancer care?
title_sort next-generation sequencing-based genomic profiling: fostering innovation in cancer care?
topic Clinical Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5666438/
https://www.ncbi.nlm.nih.gov/pubmed/29160420
http://dx.doi.org/10.6061/clinics/2017(10)01
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