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Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database

Deep learning emerges as a powerful tool for analyzing medical images. Retinal disease detection by using computer-aided diagnosis from fundus image has emerged as a new method. We applied deep learning convolutional neural network by using MatConvNet for an automated detection of multiple retinal d...

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Autores principales: Choi, Joon Yul, Yoo, Tae Keun, Seo, Jeong Gi, Kwak, Jiyong, Um, Terry Taewoong, Rim, Tyler Hyungtaek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5667846/
https://www.ncbi.nlm.nih.gov/pubmed/29095872
http://dx.doi.org/10.1371/journal.pone.0187336
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author Choi, Joon Yul
Yoo, Tae Keun
Seo, Jeong Gi
Kwak, Jiyong
Um, Terry Taewoong
Rim, Tyler Hyungtaek
author_facet Choi, Joon Yul
Yoo, Tae Keun
Seo, Jeong Gi
Kwak, Jiyong
Um, Terry Taewoong
Rim, Tyler Hyungtaek
author_sort Choi, Joon Yul
collection PubMed
description Deep learning emerges as a powerful tool for analyzing medical images. Retinal disease detection by using computer-aided diagnosis from fundus image has emerged as a new method. We applied deep learning convolutional neural network by using MatConvNet for an automated detection of multiple retinal diseases with fundus photographs involved in STructured Analysis of the REtina (STARE) database. Dataset was built by expanding data on 10 categories, including normal retina and nine retinal diseases. The optimal outcomes were acquired by using a random forest transfer learning based on VGG-19 architecture. The classification results depended greatly on the number of categories. As the number of categories increased, the performance of deep learning models was diminished. When all 10 categories were included, we obtained results with an accuracy of 30.5%, relative classifier information (RCI) of 0.052, and Cohen’s kappa of 0.224. Considering three integrated normal, background diabetic retinopathy, and dry age-related macular degeneration, the multi-categorical classifier showed accuracy of 72.8%, 0.283 RCI, and 0.577 kappa. In addition, several ensemble classifiers enhanced the multi-categorical classification performance. The transfer learning incorporated with ensemble classifier of clustering and voting approach presented the best performance with accuracy of 36.7%, 0.053 RCI, and 0.225 kappa in the 10 retinal diseases classification problem. First, due to the small size of datasets, the deep learning techniques in this study were ineffective to be applied in clinics where numerous patients suffering from various types of retinal disorders visit for diagnosis and treatment. Second, we found that the transfer learning incorporated with ensemble classifiers can improve the classification performance in order to detect multi-categorical retinal diseases. Further studies should confirm the effectiveness of algorithms with large datasets obtained from hospitals.
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spelling pubmed-56678462017-11-17 Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database Choi, Joon Yul Yoo, Tae Keun Seo, Jeong Gi Kwak, Jiyong Um, Terry Taewoong Rim, Tyler Hyungtaek PLoS One Research Article Deep learning emerges as a powerful tool for analyzing medical images. Retinal disease detection by using computer-aided diagnosis from fundus image has emerged as a new method. We applied deep learning convolutional neural network by using MatConvNet for an automated detection of multiple retinal diseases with fundus photographs involved in STructured Analysis of the REtina (STARE) database. Dataset was built by expanding data on 10 categories, including normal retina and nine retinal diseases. The optimal outcomes were acquired by using a random forest transfer learning based on VGG-19 architecture. The classification results depended greatly on the number of categories. As the number of categories increased, the performance of deep learning models was diminished. When all 10 categories were included, we obtained results with an accuracy of 30.5%, relative classifier information (RCI) of 0.052, and Cohen’s kappa of 0.224. Considering three integrated normal, background diabetic retinopathy, and dry age-related macular degeneration, the multi-categorical classifier showed accuracy of 72.8%, 0.283 RCI, and 0.577 kappa. In addition, several ensemble classifiers enhanced the multi-categorical classification performance. The transfer learning incorporated with ensemble classifier of clustering and voting approach presented the best performance with accuracy of 36.7%, 0.053 RCI, and 0.225 kappa in the 10 retinal diseases classification problem. First, due to the small size of datasets, the deep learning techniques in this study were ineffective to be applied in clinics where numerous patients suffering from various types of retinal disorders visit for diagnosis and treatment. Second, we found that the transfer learning incorporated with ensemble classifiers can improve the classification performance in order to detect multi-categorical retinal diseases. Further studies should confirm the effectiveness of algorithms with large datasets obtained from hospitals. Public Library of Science 2017-11-02 /pmc/articles/PMC5667846/ /pubmed/29095872 http://dx.doi.org/10.1371/journal.pone.0187336 Text en © 2017 Choi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Choi, Joon Yul
Yoo, Tae Keun
Seo, Jeong Gi
Kwak, Jiyong
Um, Terry Taewoong
Rim, Tyler Hyungtaek
Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title_full Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title_fullStr Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title_full_unstemmed Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title_short Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database
title_sort multi-categorical deep learning neural network to classify retinal images: a pilot study employing small database
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5667846/
https://www.ncbi.nlm.nih.gov/pubmed/29095872
http://dx.doi.org/10.1371/journal.pone.0187336
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