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Percolation transition of cooperative mutational effects in colorectal tumorigenesis
Cancer is caused by the accumulation of multiple genetic mutations, but their cooperative effects are poorly understood. Using a genome-wide analysis of all the somatic mutations in colorectal cancer patients in a large-scale molecular interaction network, here we find that a giant cluster of mutati...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668266/ https://www.ncbi.nlm.nih.gov/pubmed/29097710 http://dx.doi.org/10.1038/s41467-017-01171-6 |
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author | Shin, Dongkwan Lee, Jonghoon Gong, Jeong-Ryeol Cho, Kwang-Hyun |
author_facet | Shin, Dongkwan Lee, Jonghoon Gong, Jeong-Ryeol Cho, Kwang-Hyun |
author_sort | Shin, Dongkwan |
collection | PubMed |
description | Cancer is caused by the accumulation of multiple genetic mutations, but their cooperative effects are poorly understood. Using a genome-wide analysis of all the somatic mutations in colorectal cancer patients in a large-scale molecular interaction network, here we find that a giant cluster of mutation-propagating modules in the network undergoes a percolation transition, a sudden critical transition from scattered small modules to a large connected cluster, during colorectal tumorigenesis. Such a large cluster ultimately results in a giant percolated cluster, which is accompanied by phenotypic changes corresponding to cancer hallmarks. Moreover, we find that the most commonly observed sequence of driver mutations in colorectal cancer has been optimized to maximize the giant percolated cluster. Our network-level percolation study shows that the cooperative effect rather than any single dominance of multiple somatic mutations is crucial in colorectal tumorigenesis. |
format | Online Article Text |
id | pubmed-5668266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-56682662017-11-07 Percolation transition of cooperative mutational effects in colorectal tumorigenesis Shin, Dongkwan Lee, Jonghoon Gong, Jeong-Ryeol Cho, Kwang-Hyun Nat Commun Article Cancer is caused by the accumulation of multiple genetic mutations, but their cooperative effects are poorly understood. Using a genome-wide analysis of all the somatic mutations in colorectal cancer patients in a large-scale molecular interaction network, here we find that a giant cluster of mutation-propagating modules in the network undergoes a percolation transition, a sudden critical transition from scattered small modules to a large connected cluster, during colorectal tumorigenesis. Such a large cluster ultimately results in a giant percolated cluster, which is accompanied by phenotypic changes corresponding to cancer hallmarks. Moreover, we find that the most commonly observed sequence of driver mutations in colorectal cancer has been optimized to maximize the giant percolated cluster. Our network-level percolation study shows that the cooperative effect rather than any single dominance of multiple somatic mutations is crucial in colorectal tumorigenesis. Nature Publishing Group UK 2017-11-02 /pmc/articles/PMC5668266/ /pubmed/29097710 http://dx.doi.org/10.1038/s41467-017-01171-6 Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Shin, Dongkwan Lee, Jonghoon Gong, Jeong-Ryeol Cho, Kwang-Hyun Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title | Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title_full | Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title_fullStr | Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title_full_unstemmed | Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title_short | Percolation transition of cooperative mutational effects in colorectal tumorigenesis |
title_sort | percolation transition of cooperative mutational effects in colorectal tumorigenesis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668266/ https://www.ncbi.nlm.nih.gov/pubmed/29097710 http://dx.doi.org/10.1038/s41467-017-01171-6 |
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