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Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams

Serial synchrotron-based crystallography using intense microfocused X-ray beams, fast-framing detectors and protein microcrystals held at 300 K promises to expand the range of accessible structural targets and to increase overall structure-pipeline throughputs. To explore the nature and consequences...

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Autores principales: Warkentin, Matthew A., Atakisi, Hakan, Hopkins, Jesse B., Walko, Donald, Thorne, Robert E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668864/
https://www.ncbi.nlm.nih.gov/pubmed/29123681
http://dx.doi.org/10.1107/S2052252517013495
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author Warkentin, Matthew A.
Atakisi, Hakan
Hopkins, Jesse B.
Walko, Donald
Thorne, Robert E.
author_facet Warkentin, Matthew A.
Atakisi, Hakan
Hopkins, Jesse B.
Walko, Donald
Thorne, Robert E.
author_sort Warkentin, Matthew A.
collection PubMed
description Serial synchrotron-based crystallography using intense microfocused X-ray beams, fast-framing detectors and protein microcrystals held at 300 K promises to expand the range of accessible structural targets and to increase overall structure-pipeline throughputs. To explore the nature and consequences of X-ray radiation damage under microbeam illumination, the time-, dose- and temperature-dependent evolution of crystal diffraction have been measured with maximum dose rates of 50 MGy s(−1). At all temperatures and dose rates, the integrated diffraction intensity for a fixed crystal orientation shows non-exponential decays with dose. Non-exponential decays are a consequence of non-uniform illumination and the resulting spatial evolution of diffracted intensity within the illuminated crystal volume. To quantify radiation-damage lifetimes and the damage state of diffracting crystal regions, a revised diffraction-weighted dose (DWD) is defined and it is shown that for Gaussian beams the DWD becomes nearly independent of actual dose at large doses. An apparent delayed onset of radiation damage seen in some intensity–dose curves is in fact a consequence of damage. Intensity fluctuations at high dose rates may arise from the impulsive release of gaseous damage products. Accounting for these effects, data collection at the highest dose rates increases crystal radiation lifetimes near 300 K (but not at 100 K) by a factor of ∼1.5–2 compared with those observed at conventional dose rates. Improved quantification and modeling of the complex spatio-temporal evolution of protein microcrystal diffraction in intense microbeams will enable more efficient data collection, and will be essential in improving the accuracy of structure factors and structural models.
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spelling pubmed-56688642017-11-09 Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams Warkentin, Matthew A. Atakisi, Hakan Hopkins, Jesse B. Walko, Donald Thorne, Robert E. IUCrJ Research Papers Serial synchrotron-based crystallography using intense microfocused X-ray beams, fast-framing detectors and protein microcrystals held at 300 K promises to expand the range of accessible structural targets and to increase overall structure-pipeline throughputs. To explore the nature and consequences of X-ray radiation damage under microbeam illumination, the time-, dose- and temperature-dependent evolution of crystal diffraction have been measured with maximum dose rates of 50 MGy s(−1). At all temperatures and dose rates, the integrated diffraction intensity for a fixed crystal orientation shows non-exponential decays with dose. Non-exponential decays are a consequence of non-uniform illumination and the resulting spatial evolution of diffracted intensity within the illuminated crystal volume. To quantify radiation-damage lifetimes and the damage state of diffracting crystal regions, a revised diffraction-weighted dose (DWD) is defined and it is shown that for Gaussian beams the DWD becomes nearly independent of actual dose at large doses. An apparent delayed onset of radiation damage seen in some intensity–dose curves is in fact a consequence of damage. Intensity fluctuations at high dose rates may arise from the impulsive release of gaseous damage products. Accounting for these effects, data collection at the highest dose rates increases crystal radiation lifetimes near 300 K (but not at 100 K) by a factor of ∼1.5–2 compared with those observed at conventional dose rates. Improved quantification and modeling of the complex spatio-temporal evolution of protein microcrystal diffraction in intense microbeams will enable more efficient data collection, and will be essential in improving the accuracy of structure factors and structural models. International Union of Crystallography 2017-10-13 /pmc/articles/PMC5668864/ /pubmed/29123681 http://dx.doi.org/10.1107/S2052252517013495 Text en © Matthew A. Warkentin et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Warkentin, Matthew A.
Atakisi, Hakan
Hopkins, Jesse B.
Walko, Donald
Thorne, Robert E.
Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title_full Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title_fullStr Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title_full_unstemmed Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title_short Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams
title_sort lifetimes and spatio-temporal response of protein crystals in intense x-ray microbeams
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668864/
https://www.ncbi.nlm.nih.gov/pubmed/29123681
http://dx.doi.org/10.1107/S2052252517013495
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