K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

BACKGROUND: De novo transcriptome assembly is an important technique for understanding gene expression in non-model organisms. Many de novo assemblers using the de Bruijn graph of a set of the RNA sequences rely on in-memory representation of this graph. However, current methods analyse the complete...

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Detalles Bibliográficos
Autores principales: Kim, Chang Sik, Winn, Martyn D., Sachdeva, Vipin, Jordan, Kirk E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5670514/
https://www.ncbi.nlm.nih.gov/pubmed/29100493
http://dx.doi.org/10.1186/s12859-017-1881-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5670514/
https://www.ncbi.nlm.nih.gov/pubmed/29100493
http://dx.doi.org/10.1186/s12859-017-1881-8

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