Cargando…
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
BACKGROUND: De novo transcriptome assembly is an important technique for understanding gene expression in non-model organisms. Many de novo assemblers using the de Bruijn graph of a set of the RNA sequences rely on in-memory representation of this graph. However, current methods analyse the complete...
| Autores principales: | , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2017
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5670514/ https://www.ncbi.nlm.nih.gov/pubmed/29100493 http://dx.doi.org/10.1186/s12859-017-1881-8 |