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The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning
Abstract. Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Pensoft Publishers
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5672579/ https://www.ncbi.nlm.nih.gov/pubmed/29118589 http://dx.doi.org/10.3897/zookeys.688.13721 |
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author | Conrado, Ana C. Arruda, Hugo Stanton, David W.G. James, Samuel W. Peter Kille, Brown, George Silva, Elodie Dupont, Lise Taheri, Shabnam Morgan, Andrew J. Simões, Nelson Rodrigues, Armindo Montiel, Rafael Cunha, Luis |
author_facet | Conrado, Ana C. Arruda, Hugo Stanton, David W.G. James, Samuel W. Peter Kille, Brown, George Silva, Elodie Dupont, Lise Taheri, Shabnam Morgan, Andrew J. Simões, Nelson Rodrigues, Armindo Montiel, Rafael Cunha, Luis |
author_sort | Conrado, Ana C. |
collection | PubMed |
description | Abstract. Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG) 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms but unusual among invertebrates it hasseveral overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3 which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A 28.1% T 14.6% G and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053. |
format | Online Article Text |
id | pubmed-5672579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-56725792017-11-08 The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning Conrado, Ana C. Arruda, Hugo Stanton, David W.G. James, Samuel W. Peter Kille, Brown, George Silva, Elodie Dupont, Lise Taheri, Shabnam Morgan, Andrew J. Simões, Nelson Rodrigues, Armindo Montiel, Rafael Cunha, Luis Zookeys Research Article Abstract. Pontoscolex corethrurus (Müller, 1857) plays an important role in tropical soil ecosystems and has been widely used as an animal model for a large variety of ecological studies in particular due to its common presence and generally high abundance in human-disturbed tropical soils. In this study we describe the complete mitochondrial genome of the peregrine earthworm P. corethrurus. This is the first record of a mitochondrial genome within the Rhinodrilidae family. Its mitochondrial genome is 14 835 bp in length containing 37 genes (13 protein-coding genes (PCG) 2 rRNA genes and 22 tRNA genes). It has the same gene content and structure as in other sequenced earthworms but unusual among invertebrates it hasseveral overlapping open reading frames. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND3 which uses GTG as the start codon. The A+T content of the mitochondrial genome is 59.9% (31.8% A 28.1% T 14.6% G and 25.6% for C). The annotated genome sequence has been deposited in GenBank under the accession number KT988053. Pensoft Publishers 2017-08-08 /pmc/articles/PMC5672579/ /pubmed/29118589 http://dx.doi.org/10.3897/zookeys.688.13721 Text en Ana C. Conrado, Hugo Arruda, David W.G. Stanton, Samuel W. James, Peter Kille, George Brown, Elodie Silva, Lise Dupont, Shabnam Taheri, Andrew J. Morgan, Nelson Simões, Armindo Rodrigues, Rafael Montiel, Luis Cunha http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Conrado, Ana C. Arruda, Hugo Stanton, David W.G. James, Samuel W. Peter Kille, Brown, George Silva, Elodie Dupont, Lise Taheri, Shabnam Morgan, Andrew J. Simões, Nelson Rodrigues, Armindo Montiel, Rafael Cunha, Luis The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title | The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex
corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title_full | The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex
corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title_fullStr | The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex
corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title_full_unstemmed | The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex
corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title_short | The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex
corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning |
title_sort | complete mitochondrial dna sequence of the pantropical earthworm pontoscolex
corethrurus (rhinodrilidae, clitellata): mitogenome characterization and phylogenetic positioning |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5672579/ https://www.ncbi.nlm.nih.gov/pubmed/29118589 http://dx.doi.org/10.3897/zookeys.688.13721 |
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