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The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization

Circular RNAs comprise a new class of long noncoding RNAs characterized by their 5′ and 3′ ends covalently joined. Previous studies have demonstrated that some circular RNAs act as microRNA sponges, and are associated with cellular proliferation in cancer. We were the first to analyze the global exp...

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Autores principales: Vidal, Amanda Ferreira, Ribeiro-dos-Santos, André M., Vinasco-Sandoval, Tatiana, Magalhães, Leandro, Pinto, Pablo, Anaissi, Ana K. M., Demachki, Samia, de Assumpção, Paulo Pimentel, dos Santos, Sidney Emanuel Batista, Ribeiro-dos-Santos, Ândrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5673933/
https://www.ncbi.nlm.nih.gov/pubmed/29109417
http://dx.doi.org/10.1038/s41598-017-15061-w
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author Vidal, Amanda Ferreira
Ribeiro-dos-Santos, André M.
Vinasco-Sandoval, Tatiana
Magalhães, Leandro
Pinto, Pablo
Anaissi, Ana K. M.
Demachki, Samia
de Assumpção, Paulo Pimentel
dos Santos, Sidney Emanuel Batista
Ribeiro-dos-Santos, Ândrea
author_facet Vidal, Amanda Ferreira
Ribeiro-dos-Santos, André M.
Vinasco-Sandoval, Tatiana
Magalhães, Leandro
Pinto, Pablo
Anaissi, Ana K. M.
Demachki, Samia
de Assumpção, Paulo Pimentel
dos Santos, Sidney Emanuel Batista
Ribeiro-dos-Santos, Ândrea
author_sort Vidal, Amanda Ferreira
collection PubMed
description Circular RNAs comprise a new class of long noncoding RNAs characterized by their 5′ and 3′ ends covalently joined. Previous studies have demonstrated that some circular RNAs act as microRNA sponges, and are associated with cellular proliferation in cancer. We were the first to analyze the global expression of circular RNAs in samples of patients without gastric cancer, gastric cancer, and matched tumor-adjacent gastric tissue. Among the samples, we identified 736 previously annotated circular RNAs by RNA-Seq. The tumor-adjacent tissue presented the higher abundance of circular RNAs and could not be considered as a normal tissue, reinforcing the notion of field effect in gastric cancer. We identified five differentially expressed circular RNAs that may be potential biomarkers of this type of cancer. We also predicted candidate microRNAs targets of the highest expressed circular RNAs in gastric tissues and found five miRNAs. Overall, our results support the hypothesis of circular RNAs representing a novel factor in the dynamic epigenetic network of gene regulation, which involves the microRNAs, its mRNAs targets, and the circular RNAs-derived genes. Further studies are needed to elucidate the roles and the functional relevance of the circular RNAs in human diseases.
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spelling pubmed-56739332017-11-15 The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization Vidal, Amanda Ferreira Ribeiro-dos-Santos, André M. Vinasco-Sandoval, Tatiana Magalhães, Leandro Pinto, Pablo Anaissi, Ana K. M. Demachki, Samia de Assumpção, Paulo Pimentel dos Santos, Sidney Emanuel Batista Ribeiro-dos-Santos, Ândrea Sci Rep Article Circular RNAs comprise a new class of long noncoding RNAs characterized by their 5′ and 3′ ends covalently joined. Previous studies have demonstrated that some circular RNAs act as microRNA sponges, and are associated with cellular proliferation in cancer. We were the first to analyze the global expression of circular RNAs in samples of patients without gastric cancer, gastric cancer, and matched tumor-adjacent gastric tissue. Among the samples, we identified 736 previously annotated circular RNAs by RNA-Seq. The tumor-adjacent tissue presented the higher abundance of circular RNAs and could not be considered as a normal tissue, reinforcing the notion of field effect in gastric cancer. We identified five differentially expressed circular RNAs that may be potential biomarkers of this type of cancer. We also predicted candidate microRNAs targets of the highest expressed circular RNAs in gastric tissues and found five miRNAs. Overall, our results support the hypothesis of circular RNAs representing a novel factor in the dynamic epigenetic network of gene regulation, which involves the microRNAs, its mRNAs targets, and the circular RNAs-derived genes. Further studies are needed to elucidate the roles and the functional relevance of the circular RNAs in human diseases. Nature Publishing Group UK 2017-11-06 /pmc/articles/PMC5673933/ /pubmed/29109417 http://dx.doi.org/10.1038/s41598-017-15061-w Text en © The Author(s) 2017 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Vidal, Amanda Ferreira
Ribeiro-dos-Santos, André M.
Vinasco-Sandoval, Tatiana
Magalhães, Leandro
Pinto, Pablo
Anaissi, Ana K. M.
Demachki, Samia
de Assumpção, Paulo Pimentel
dos Santos, Sidney Emanuel Batista
Ribeiro-dos-Santos, Ândrea
The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title_full The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title_fullStr The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title_full_unstemmed The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title_short The comprehensive expression analysis of circular RNAs in gastric cancer and its association with field cancerization
title_sort comprehensive expression analysis of circular rnas in gastric cancer and its association with field cancerization
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5673933/
https://www.ncbi.nlm.nih.gov/pubmed/29109417
http://dx.doi.org/10.1038/s41598-017-15061-w
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