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Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences
Abstract. The 137 individuals of Johnius grypotus were collected from seven localities from the Bohai Sea to the East China Sea. A 549 base pair (bp) fragment of the hypervariable region of the mtDNA control region was sequenced to examine genetic diversity and population structure. The populations...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5674069/ https://www.ncbi.nlm.nih.gov/pubmed/29118616 http://dx.doi.org/10.3897/zookeys.705.13001 |
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author | Zhao, Linlin Yi, Dan Li, Chunhou Sun, Dianrong Xu, Hanxiang Gao, Tianxiang |
author_facet | Zhao, Linlin Yi, Dan Li, Chunhou Sun, Dianrong Xu, Hanxiang Gao, Tianxiang |
author_sort | Zhao, Linlin |
collection | PubMed |
description | Abstract. The 137 individuals of Johnius grypotus were collected from seven localities from the Bohai Sea to the East China Sea. A 549 base pair (bp) fragment of the hypervariable region of the mtDNA control region was sequenced to examine genetic diversity and population structure. The populations of J. grypotus showed high haplotype diversity (h) with a range from 0.7500 to 0.9740 and low nucleotide diversity (π) with a range from 0.0024 to 0.0067. Low and non-significant genetic differentiation was estimated among populations except for North Yellow Sea population, which has a significant genetic difference with other populations. The demographic history examined by mismatch distribution analyses and Bayesian skyline plot (BSP) analyses revealed that a sudden population expansion occurred almost 20 to 40 thousand years before. Relatively recent population expansion in the last glacial period, large dispersal of eggs or larvae carried by coastal current, and the homogeneity of living environment may have an important influence on the population genetic pattern. |
format | Online Article Text |
id | pubmed-5674069 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-56740692017-11-08 Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences Zhao, Linlin Yi, Dan Li, Chunhou Sun, Dianrong Xu, Hanxiang Gao, Tianxiang Zookeys Research Article Abstract. The 137 individuals of Johnius grypotus were collected from seven localities from the Bohai Sea to the East China Sea. A 549 base pair (bp) fragment of the hypervariable region of the mtDNA control region was sequenced to examine genetic diversity and population structure. The populations of J. grypotus showed high haplotype diversity (h) with a range from 0.7500 to 0.9740 and low nucleotide diversity (π) with a range from 0.0024 to 0.0067. Low and non-significant genetic differentiation was estimated among populations except for North Yellow Sea population, which has a significant genetic difference with other populations. The demographic history examined by mismatch distribution analyses and Bayesian skyline plot (BSP) analyses revealed that a sudden population expansion occurred almost 20 to 40 thousand years before. Relatively recent population expansion in the last glacial period, large dispersal of eggs or larvae carried by coastal current, and the homogeneity of living environment may have an important influence on the population genetic pattern. Pensoft Publishers 2017-10-03 /pmc/articles/PMC5674069/ /pubmed/29118616 http://dx.doi.org/10.3897/zookeys.705.13001 Text en Linlin Zhao, Dan Yi, Chunhou Li, Dianrong Sun, Hanxiang Xu, Tianxiang Gao http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Zhao, Linlin Yi, Dan Li, Chunhou Sun, Dianrong Xu, Hanxiang Gao, Tianxiang Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title | Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title_full | Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title_fullStr | Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title_full_unstemmed | Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title_short | Phylogeography and population structure of - grypotus (Richardson, 1846) as revealed by mitochondrial control region sequences |
title_sort | phylogeography and population structure of - grypotus (richardson, 1846) as revealed by mitochondrial control region sequences |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5674069/ https://www.ncbi.nlm.nih.gov/pubmed/29118616 http://dx.doi.org/10.3897/zookeys.705.13001 |
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