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Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini
[Image: see text] R67 dihydrofolate reductase (DHFR) is a homotetramer with a single active site pore and no sequence or structural homology with chromosomal DHFRs. The R67 enzyme provides resistance to trimethoprim, an active site-directed inhibitor of Escherichia coli DHFR. Sixteen to twenty N-ter...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678894/ https://www.ncbi.nlm.nih.gov/pubmed/29020453 http://dx.doi.org/10.1021/acs.biochem.7b00822 |
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author | Bhojane, Purva P. Duff, Michael R. Bafna, Khushboo Agarwal, Pratul Stanley, Christopher Howell, Elizabeth E. |
author_facet | Bhojane, Purva P. Duff, Michael R. Bafna, Khushboo Agarwal, Pratul Stanley, Christopher Howell, Elizabeth E. |
author_sort | Bhojane, Purva P. |
collection | PubMed |
description | [Image: see text] R67 dihydrofolate reductase (DHFR) is a homotetramer with a single active site pore and no sequence or structural homology with chromosomal DHFRs. The R67 enzyme provides resistance to trimethoprim, an active site-directed inhibitor of Escherichia coli DHFR. Sixteen to twenty N-terminal amino acids are intrinsically disordered in the R67 dimer crystal structure. Chymotrypsin cleavage of 16 N-terminal residues results in an active enzyme with a decreased stability. The space sampled by the disordered N-termini of R67 DHFR was investigated using small angle neutron scattering. From a combined analysis using molecular dynamics and the program SASSIE (http://www.smallangles.net/sassie/SASSIE_HOME.html), the apoenzyme displays a radius of gyration (R(g)) of 21.46 ± 0.50 Å. Addition of glycine betaine, an osmolyte, does not result in folding of the termini as the R(g) increases slightly to 22.78 ± 0.87 Å. SASSIE fits of the latter SANS data indicate that the disordered N-termini sample larger regions of space and remain disordered, suggesting they might function as entropic bristles. Pressure perturbation calorimetry also indicated that the volume of R67 DHFR increases upon addition of 10% betaine and decreased at 20% betaine because of the dehydration of the protein. Studies of the hydration of full-length R67 DHFR in the presence of the osmolytes betaine and dimethyl sulfoxide find around 1250 water molecules hydrating the protein. Similar studies with truncated R67 DHFR yield around 400 water molecules hydrating the protein in the presence of betaine. The difference of ∼900 waters indicates the N-termini are well-hydrated. |
format | Online Article Text |
id | pubmed-5678894 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-56788942018-10-11 Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini Bhojane, Purva P. Duff, Michael R. Bafna, Khushboo Agarwal, Pratul Stanley, Christopher Howell, Elizabeth E. Biochemistry [Image: see text] R67 dihydrofolate reductase (DHFR) is a homotetramer with a single active site pore and no sequence or structural homology with chromosomal DHFRs. The R67 enzyme provides resistance to trimethoprim, an active site-directed inhibitor of Escherichia coli DHFR. Sixteen to twenty N-terminal amino acids are intrinsically disordered in the R67 dimer crystal structure. Chymotrypsin cleavage of 16 N-terminal residues results in an active enzyme with a decreased stability. The space sampled by the disordered N-termini of R67 DHFR was investigated using small angle neutron scattering. From a combined analysis using molecular dynamics and the program SASSIE (http://www.smallangles.net/sassie/SASSIE_HOME.html), the apoenzyme displays a radius of gyration (R(g)) of 21.46 ± 0.50 Å. Addition of glycine betaine, an osmolyte, does not result in folding of the termini as the R(g) increases slightly to 22.78 ± 0.87 Å. SASSIE fits of the latter SANS data indicate that the disordered N-termini sample larger regions of space and remain disordered, suggesting they might function as entropic bristles. Pressure perturbation calorimetry also indicated that the volume of R67 DHFR increases upon addition of 10% betaine and decreased at 20% betaine because of the dehydration of the protein. Studies of the hydration of full-length R67 DHFR in the presence of the osmolytes betaine and dimethyl sulfoxide find around 1250 water molecules hydrating the protein. Similar studies with truncated R67 DHFR yield around 400 water molecules hydrating the protein in the presence of betaine. The difference of ∼900 waters indicates the N-termini are well-hydrated. American Chemical Society 2017-10-11 2017-11-07 /pmc/articles/PMC5678894/ /pubmed/29020453 http://dx.doi.org/10.1021/acs.biochem.7b00822 Text en Copyright © 2017 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Bhojane, Purva P. Duff, Michael R. Bafna, Khushboo Agarwal, Pratul Stanley, Christopher Howell, Elizabeth E. Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title | Small Angle Neutron Scattering Studies of R67 Dihydrofolate
Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title_full | Small Angle Neutron Scattering Studies of R67 Dihydrofolate
Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title_fullStr | Small Angle Neutron Scattering Studies of R67 Dihydrofolate
Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title_full_unstemmed | Small Angle Neutron Scattering Studies of R67 Dihydrofolate
Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title_short | Small Angle Neutron Scattering Studies of R67 Dihydrofolate
Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini |
title_sort | small angle neutron scattering studies of r67 dihydrofolate
reductase, a tetrameric protein with intrinsically disordered n-termini |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678894/ https://www.ncbi.nlm.nih.gov/pubmed/29020453 http://dx.doi.org/10.1021/acs.biochem.7b00822 |
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