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Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima

Physalis minima is an herbaceous plant and inhabitant of the porous and organic matter containing soil of bunds in crop fields, wastelands, around the houses, and on the roadsides. S. rolfsii is soil borne and it can infect over 500 plant species of different families. It is of interest to study the...

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Autores principales: Nandi, Subhadip, Hembaram, Satyajit, Adhikari, Arindam, Tiwari, Basant Kumar, Dutta, Subrata
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5680714/
https://www.ncbi.nlm.nih.gov/pubmed/29162965
http://dx.doi.org/10.6026/97320630013333
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author Nandi, Subhadip
Hembaram, Satyajit
Adhikari, Arindam
Tiwari, Basant Kumar
Dutta, Subrata
author_facet Nandi, Subhadip
Hembaram, Satyajit
Adhikari, Arindam
Tiwari, Basant Kumar
Dutta, Subrata
author_sort Nandi, Subhadip
collection PubMed
description Physalis minima is an herbaceous plant and inhabitant of the porous and organic matter containing soil of bunds in crop fields, wastelands, around the houses, and on the roadsides. S. rolfsii is soil borne and it can infect over 500 plant species of different families. It is of interest to study the pathogenesis of S. rolfsii on P. minima. The S. rolfsii isolated from P. minima (physr1) was characterized by morphology and sequence of Internal Transcribed Spacer (ITS) region. The population structure determination and phylogenetic analysis showed the isolate physr1 significantly differs from other isolates. The null hypothesis of equal evolutionary rate was rejected throughout the Maximum likelihood (ML) tree topology of different S. rolfsii ITS sequences. The site-specific mean (relative) evolutionary rate analysis showed that most of the sites (80.59 % sites) evolved at a slower rate than average. Finally, the result of Tajima's neutrality test indicated that the population of S. rolfsii has recently begun to expand and that's why the pathogen was infecting the new host P. minima and pose a serious threat of infecting several other cropped and non-cropped hosts.
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spelling pubmed-56807142017-11-21 Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima Nandi, Subhadip Hembaram, Satyajit Adhikari, Arindam Tiwari, Basant Kumar Dutta, Subrata Bioinformation Hypothesis Physalis minima is an herbaceous plant and inhabitant of the porous and organic matter containing soil of bunds in crop fields, wastelands, around the houses, and on the roadsides. S. rolfsii is soil borne and it can infect over 500 plant species of different families. It is of interest to study the pathogenesis of S. rolfsii on P. minima. The S. rolfsii isolated from P. minima (physr1) was characterized by morphology and sequence of Internal Transcribed Spacer (ITS) region. The population structure determination and phylogenetic analysis showed the isolate physr1 significantly differs from other isolates. The null hypothesis of equal evolutionary rate was rejected throughout the Maximum likelihood (ML) tree topology of different S. rolfsii ITS sequences. The site-specific mean (relative) evolutionary rate analysis showed that most of the sites (80.59 % sites) evolved at a slower rate than average. Finally, the result of Tajima's neutrality test indicated that the population of S. rolfsii has recently begun to expand and that's why the pathogen was infecting the new host P. minima and pose a serious threat of infecting several other cropped and non-cropped hosts. Biomedical Informatics 2017-10-31 /pmc/articles/PMC5680714/ /pubmed/29162965 http://dx.doi.org/10.6026/97320630013333 Text en © 2017 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Nandi, Subhadip
Hembaram, Satyajit
Adhikari, Arindam
Tiwari, Basant Kumar
Dutta, Subrata
Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title_full Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title_fullStr Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title_full_unstemmed Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title_short Host Infection beyond the Traditional Range of Sclerotium (Athelia) rolfsii with Physalis minima
title_sort host infection beyond the traditional range of sclerotium (athelia) rolfsii with physalis minima
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5680714/
https://www.ncbi.nlm.nih.gov/pubmed/29162965
http://dx.doi.org/10.6026/97320630013333
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