Cargando…

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

BACKGROUND: To elucidate biogas microbial communities and processes, the application of high-throughput DNA analysis approaches is becoming increasingly important. Unfortunately, generated data can only partialy be interpreted rudimentary since databases lack reference sequences. RESULTS: Novel cell...

Descripción completa

Detalles Bibliográficos
Autores principales:	Maus, Irena, Bremges, Andreas, Stolze, Yvonne, Hahnke, Sarah, Cibis, Katharina G., Koeck, Daniela E., Kim, Yong S., Kreubel, Jana, Hassa, Julia, Wibberg, Daniel, Weimann, Aaron, Off, Sandra, Stantscheff, Robbin, Zverlov, Vladimir V., Schwarz, Wolfgang H., König, Helmut, Liebl, Wolfgang, Scherer, Paul, McHardy, Alice C., Sczyrba, Alexander, Klocke, Michael, Pühler, Alfred, Schlüter, Andreas
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5684752/ https://www.ncbi.nlm.nih.gov/pubmed/29158776 http://dx.doi.org/10.1186/s13068-017-0947-1

Ejemplares similares

Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates
por: Maus, Irena, et al.
Publicado: (2016)

Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
por: Stolze, Yvonne, et al.
Publicado: (2017)

Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
por: Hassa, Julia, et al.
Publicado: (2018)

Complete Genome Sequence of Herbinix luporum SD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
por: Koeck, Daniela E., et al.
Publicado: (2016)

Draft Genome Sequence of Propionispora sp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
por: Koeck, Daniela E., et al.
Publicado: (2016)

Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
por: Stolze, Yvonne, et al.
Publicado: (2016)

The Role of Petrimonas mucosa ING2-E5A(T) in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
por: Maus, Irena, et al.
Publicado: (2020)

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
por: Bremges, Andreas, et al.
Publicado: (2015)

Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
por: Hassa, Julia, et al.
Publicado: (2019)

Proteiniphilum saccharofermentans str. M3/6(T) isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions
por: Tomazetto, Geizecler, et al.
Publicado: (2018)

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
por: Eikmeyer, Felix G, et al.
Publicado: (2013)

The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9(T), its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses
por: Maus, Irena, et al.
Publicado: (2022)

Complete Genome Sequence of the Methanogen Methanoculleus bourgensis BA1 Isolated from a Biogas Reactor
por: Maus, Irena, et al.
Publicado: (2016)

Complete Genome Sequence of the Novel Cellulolytic, Anaerobic, Thermophilic Bacterium Herbivorax saccincola Type Strain GGR1, Isolated from a Lab Scale Biogas Reactor as Established by Illumina and Nanopore MinION Sequencing
por: Pechtl, Alexander, et al.
Publicado: (2018)

Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
por: Maus, Irena, et al.
Publicado: (2018)

Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics
por: Hassa, Julia, et al.
Publicado: (2023)

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
por: Stolze, Yvonne, et al.
Publicado: (2015)

DNA and RNA Extraction and Quantitative Real-Time PCR-Based Assays for Biogas Biocenoses in an Interlaboratory Comparison
por: Lebuhn, Michael, et al.
Publicado: (2016)

Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
por: Maus, Irena, et al.
Publicado: (2020)

Arabinan saccharification by biogas reactor metagenome-derived arabinosyl hydrolases
por: Liu, Yajing, et al.
Publicado: (2022)

Draft Genome Sequence of Anaerosphaera sp. Strain GS7-6-2, a Coccal Bacterium Isolated from a Biogas-Related Environment
por: Rettenmaier, Regina, et al.
Publicado: (2019)

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
por: Hassa, Julia, et al.
Publicado: (2021)

Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
por: Rettenmaier, Regina, et al.
Publicado: (2020)

Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type
por: Heyer, R., et al.
Publicado: (2016)

A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters
por: Rettenmaier, Regina, et al.
Publicado: (2020)

Complete Genome Sequence of Acinetobacter baumannii CIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
por: Krahn, Thomas, et al.
Publicado: (2015)

Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing
por: Willenbücher, Katharina, et al.
Publicado: (2022)

Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase Gene bla(NDM-1)
por: Krahn, Thomas, et al.
Publicado: (2015)

Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
por: Nelkner, Johanna, et al.
Publicado: (2019)

Bioboxes: standardised containers for interchangeable bioinformatics software
por: Belmann, Peter, et al.
Publicado: (2015)

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer
por: Weimann, Aaron, et al.
Publicado: (2016)

MeCorS: Metagenome-enabled error correction of single cell sequencing reads
por: Bremges, Andreas, et al.
Publicado: (2016)

Critical Assessment of Metagenome Interpretation Enters the Second Round
por: Bremges, Andreas, et al.
Publicado: (2018)

Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
por: Bartholomäus, Anika, et al.
Publicado: (2016)

Draft Genome Sequence of Clostridium beijerinckii Strain mbf-VZ-132, Isolated from an Environmental Soil Sample
por: Thieme, Nils, et al.
Publicado: (2021)

Biochemical characterisation of four rhamnosidases from thermophilic bacteria of the genera Thermotoga, Caldicellulosiruptor and Thermoclostridium
por: Baudrexl, Melanie, et al.
Publicado: (2019)

CAMITAX: Taxon labels for microbial genomes
por: Bremges, Andreas, et al.
Publicado: (2020)

Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
por: Dziewit, Lukasz, et al.
Publicado: (2015)

Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
por: Salto, Ileana P., et al.
Publicado: (2018)

Estimation of the biogas production rate, a chemometrical approach
por: Beltramo, Tetyana, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_h2fmpj30ondg01dprhdsqfoap1