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The metagenome of bromeliads phytotelma in Puerto Rico
Bromeliads tank water or phytotelma is an eutrophic microenvironment where microorganisms have evolved to resist sudden changes in pH and nutritional competition. Metagenomics studies have been poorly studied in bromeliads and environmental DNA (eDNA) characterization for its microenvironment is def...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686464/ https://www.ncbi.nlm.nih.gov/pubmed/29167815 http://dx.doi.org/10.1016/j.dib.2017.10.065 |
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author | Rodriguez-Nuñez, Kiara M. Rullan-Cardec, Jesie M. Rios-Velazquez, Carlos |
author_facet | Rodriguez-Nuñez, Kiara M. Rullan-Cardec, Jesie M. Rios-Velazquez, Carlos |
author_sort | Rodriguez-Nuñez, Kiara M. |
collection | PubMed |
description | Bromeliads tank water or phytotelma is an eutrophic microenvironment where microorganisms have evolved to resist sudden changes in pH and nutritional competition. Metagenomics studies have been poorly studied in bromeliads and environmental DNA (eDNA) characterization for its microenvironment is deficient in Puerto Rico. Therefore, the data represents the microbial communities inhabiting bromeliads phytotelma. eDNA was extracted using Metagenomic DNA Isolation Kit for Water. Next-Generation-Sequencing technology (Illumina MiSeq) was used for sequencing the isolated eDNA. This data provides an insight about diversity and functional depiction of microorganisms inhabiting bromeliads phytotelma. The data of this metagenome is available in the BioSample Submission Portal as Bioproject PRJNA39461 and Sequence Read Archive (SRA) accession number SRP114300. MG-RAST metagenomic analysis server is located under the study ID mgp79812. |
format | Online Article Text |
id | pubmed-5686464 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-56864642017-11-22 The metagenome of bromeliads phytotelma in Puerto Rico Rodriguez-Nuñez, Kiara M. Rullan-Cardec, Jesie M. Rios-Velazquez, Carlos Data Brief Genetics, Genomics and Molecular Biology Bromeliads tank water or phytotelma is an eutrophic microenvironment where microorganisms have evolved to resist sudden changes in pH and nutritional competition. Metagenomics studies have been poorly studied in bromeliads and environmental DNA (eDNA) characterization for its microenvironment is deficient in Puerto Rico. Therefore, the data represents the microbial communities inhabiting bromeliads phytotelma. eDNA was extracted using Metagenomic DNA Isolation Kit for Water. Next-Generation-Sequencing technology (Illumina MiSeq) was used for sequencing the isolated eDNA. This data provides an insight about diversity and functional depiction of microorganisms inhabiting bromeliads phytotelma. The data of this metagenome is available in the BioSample Submission Portal as Bioproject PRJNA39461 and Sequence Read Archive (SRA) accession number SRP114300. MG-RAST metagenomic analysis server is located under the study ID mgp79812. Elsevier 2017-11-01 /pmc/articles/PMC5686464/ /pubmed/29167815 http://dx.doi.org/10.1016/j.dib.2017.10.065 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Genetics, Genomics and Molecular Biology Rodriguez-Nuñez, Kiara M. Rullan-Cardec, Jesie M. Rios-Velazquez, Carlos The metagenome of bromeliads phytotelma in Puerto Rico |
title | The metagenome of bromeliads phytotelma in Puerto Rico |
title_full | The metagenome of bromeliads phytotelma in Puerto Rico |
title_fullStr | The metagenome of bromeliads phytotelma in Puerto Rico |
title_full_unstemmed | The metagenome of bromeliads phytotelma in Puerto Rico |
title_short | The metagenome of bromeliads phytotelma in Puerto Rico |
title_sort | metagenome of bromeliads phytotelma in puerto rico |
topic | Genetics, Genomics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5686464/ https://www.ncbi.nlm.nih.gov/pubmed/29167815 http://dx.doi.org/10.1016/j.dib.2017.10.065 |
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