Cargando…

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities

Morphology-based profiling of benthic communities has been extensively applied to aquatic ecosystems’ health assessment. However, it remains a low-throughput, and sometimes ambiguous, procedure. Despite DNA metabarcoding has been applied to marine benthos, a comprehensive approach providing species-...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lobo, Jorge, Shokralla, Shadi, Costa, Maria Helena, Hajibabaei, Mehrdad, Costa, Filipe Oliveira
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688171/ https://www.ncbi.nlm.nih.gov/pubmed/29142319 http://dx.doi.org/10.1038/s41598-017-15823-6

Ejemplares similares

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers
por: Fahner, Nicole A., et al.
Publicado: (2016)

Tropical Estuarine Macrobenthic Communities Are Structured by Turnover Rather than Nestedness
por: Medeiros, Carlinda Raílly, et al.
Publicado: (2016)

Automated high throughput animal CO1 metabarcode classification
por: Porter, Teresita M., et al.
Publicado: (2018)

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
por: Hajibabaei, Mehrdad, et al.
Publicado: (2019)

DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness
por: Bush, Alex, et al.
Publicado: (2020)

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
por: Hajibabaei, Mehrdad, et al.
Publicado: (2012)

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas
por: Porter, Teresita M., et al.
Publicado: (2016)

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
por: Gibson, Joel F., et al.
Publicado: (2015)

A DNA Mini-Barcoding System for Authentication of Processed Fish Products
por: Shokralla, Shadi, et al.
Publicado: (2015)

Bottom-Up Control of Macrobenthic Communities in a Guanotrophic Coastal System
por: Signa, Geraldina, et al.
Publicado: (2015)

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens
por: Shokralla, Shadi, et al.
Publicado: (2014)

Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents
por: McClenaghan, Beverly, et al.
Publicado: (2015)

Effects of sampling strategies and DNA extraction methods on eDNA metabarcoding: A case study of estuarine fish diversity monitoring
por: Ruan, Hui-Ting, et al.
Publicado: (2022)

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
por: Porter, Teresita M, et al.
Publicado: (2014)

Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes
por: McClenaghan, Beverly, et al.
Publicado: (2020)

Fecal source tracking and eDNA profiling in an urban creek following an extreme rain event
por: Staley, Zachery R., et al.
Publicado: (2018)

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
por: Hajibabaei, Mehrdad, et al.
Publicado: (2011)

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA
por: McClenaghan, Beverly, et al.
Publicado: (2020)

Freshwater diatom biomonitoring through benthic kick-net metabarcoding
por: Maitland, Victoria Carley, et al.
Publicado: (2020)

Macrobenthic community responses to multiple environmental stressors in a subtropical estuary
por: Souza, Fernanda M., et al.
Publicado: (2021)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

Multi-marker DNA metabarcoding detects suites of environmental gradients from an urban harbour
por: Robinson, Chloe V., et al.
Publicado: (2022)

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
por: Hajibabaei, Mehrdad, et al.
Publicado: (2019)

Macrobenthic communities in a shallow normoxia to hypoxia gradient in the Humboldt upwelling ecosystem
por: Fajardo, Maritza, et al.
Publicado: (2018)

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems
por: Lallias, Delphine, et al.
Publicado: (2015)

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
por: Emilson, Caroline E., et al.
Publicado: (2017)

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
por: Piper, Alexander M, et al.
Publicado: (2019)

Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens
por: Shokralla, Shadi, et al.
Publicado: (2011)

Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morphologically cryptic species
por: Bertrand, Claudia, et al.
Publicado: (2014)

Monitoring newt communities in urban area using eDNA metabarcoding
por: Charvoz, Léo, et al.
Publicado: (2021)

Do Meio- and Macrobenthic Nematodes Differ in Community Composition and Body Weight Trends with Depth?
por: Sharma, Jyotsna, et al.
Publicado: (2011)

Submarine outfall effect on subtidal macrobenthic communities in a southwestern Atlantic coastal city
por: Cuello, Graciela Verónica, et al.
Publicado: (2023)

Comparison of traditional and DNA metabarcoding samples for monitoring tropical soil arthropods (Formicidae, Collembola and Isoptera)
por: Basset, Yves, et al.
Publicado: (2022)

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
por: Porter, T. M., et al.
Publicado: (2021)

Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient
por: Emilson, Caroline E., et al.
Publicado: (2018)

Validation of COI metabarcoding primers for terrestrial arthropods
por: Elbrecht, Vasco, et al.
Publicado: (2019)

Infaunal macrobenthic community dynamics in a manipulated hyperhaline ecosystem: a long-term study
por: Bellisario, Bruno, et al.
Publicado: (2013)

Environmental Gradient Favours Functionally Diverse Macrobenthic Community in a Placer Rich Tropical Bay
por: Sivadas, S. K., et al.
Publicado: (2013)

Species-specific effect of macrobenthic assemblages on meiobenthos and nematode community structure in shallow sandy sediments
por: Urban-Malinga, Barbara, et al.
Publicado: (2013)

Regional surveys of macrobenthic shelf invertebrate communities in Onslow Bay, North Carolina, U.S.A.
por: Tyler, Carrie L., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_53gqa7l157ehlp43pvtaomfti3