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Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches

BACKGROUND: Influenza outbreaks affect millions of people every year and its surveillance is usually carried out in developed countries through a network of sentinel doctors who report the weekly number of Influenza-like Illness cases observed among the visited patients. Monitoring and forecasting t...

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Autores principales: Brownstein, John S, Chu, Shuyu, Marathe, Achla, Marathe, Madhav V, Nguyen, Andre T, Paolotti, Daniela, Perra, Nicola, Perrotta, Daniela, Santillana, Mauricio, Swarup, Samarth, Tizzoni, Michele, Vespignani, Alessandro, Vullikanti, Anil Kumar S, Wilson, Mandy L, Zhang, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688248/
https://www.ncbi.nlm.nih.gov/pubmed/29092812
http://dx.doi.org/10.2196/publichealth.7344
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author Brownstein, John S
Chu, Shuyu
Marathe, Achla
Marathe, Madhav V
Nguyen, Andre T
Paolotti, Daniela
Perra, Nicola
Perrotta, Daniela
Santillana, Mauricio
Swarup, Samarth
Tizzoni, Michele
Vespignani, Alessandro
Vullikanti, Anil Kumar S
Wilson, Mandy L
Zhang, Qian
author_facet Brownstein, John S
Chu, Shuyu
Marathe, Achla
Marathe, Madhav V
Nguyen, Andre T
Paolotti, Daniela
Perra, Nicola
Perrotta, Daniela
Santillana, Mauricio
Swarup, Samarth
Tizzoni, Michele
Vespignani, Alessandro
Vullikanti, Anil Kumar S
Wilson, Mandy L
Zhang, Qian
author_sort Brownstein, John S
collection PubMed
description BACKGROUND: Influenza outbreaks affect millions of people every year and its surveillance is usually carried out in developed countries through a network of sentinel doctors who report the weekly number of Influenza-like Illness cases observed among the visited patients. Monitoring and forecasting the evolution of these outbreaks supports decision makers in designing effective interventions and allocating resources to mitigate their impact. OBJECTIVE: Describe the existing participatory surveillance approaches that have been used for modeling and forecasting of the seasonal influenza epidemic, and how they can help strengthen real-time epidemic science and provide a more rigorous understanding of epidemic conditions. METHODS: We describe three different participatory surveillance systems, WISDM (Widely Internet Sourced Distributed Monitoring), Influenzanet and Flu Near You (FNY), and show how modeling and simulation can be or has been combined with participatory disease surveillance to: i) measure the non-response bias in a participatory surveillance sample using WISDM; and ii) nowcast and forecast influenza activity in different parts of the world (using Influenzanet and Flu Near You). RESULTS: WISDM-based results measure the participatory and sample bias for three epidemic metrics i.e. attack rate, peak infection rate, and time-to-peak, and find the participatory bias to be the largest component of the total bias. The Influenzanet platform shows that digital participatory surveillance data combined with a realistic data-driven epidemiological model can provide both short-term and long-term forecasts of epidemic intensities, and the ground truth data lie within the 95 percent confidence intervals for most weeks. The statistical accuracy of the ensemble forecasts increase as the season progresses. The Flu Near You platform shows that participatory surveillance data provide accurate short-term flu activity forecasts and influenza activity predictions. The correlation of the HealthMap Flu Trends estimates with the observed CDC ILI rates is 0.99 for 2013-2015. Additional data sources lead to an error reduction of about 40% when compared to the estimates of the model that only incorporates CDC historical information. CONCLUSIONS: While the advantages of participatory surveillance, compared to traditional surveillance, include its timeliness, lower costs, and broader reach, it is limited by a lack of control over the characteristics of the population sample. Modeling and simulation can help overcome this limitation as well as provide real-time and long-term forecasting of influenza activity in data-poor parts of the world.
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spelling pubmed-56882482017-11-30 Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches Brownstein, John S Chu, Shuyu Marathe, Achla Marathe, Madhav V Nguyen, Andre T Paolotti, Daniela Perra, Nicola Perrotta, Daniela Santillana, Mauricio Swarup, Samarth Tizzoni, Michele Vespignani, Alessandro Vullikanti, Anil Kumar S Wilson, Mandy L Zhang, Qian JMIR Public Health Surveill Original Paper BACKGROUND: Influenza outbreaks affect millions of people every year and its surveillance is usually carried out in developed countries through a network of sentinel doctors who report the weekly number of Influenza-like Illness cases observed among the visited patients. Monitoring and forecasting the evolution of these outbreaks supports decision makers in designing effective interventions and allocating resources to mitigate their impact. OBJECTIVE: Describe the existing participatory surveillance approaches that have been used for modeling and forecasting of the seasonal influenza epidemic, and how they can help strengthen real-time epidemic science and provide a more rigorous understanding of epidemic conditions. METHODS: We describe three different participatory surveillance systems, WISDM (Widely Internet Sourced Distributed Monitoring), Influenzanet and Flu Near You (FNY), and show how modeling and simulation can be or has been combined with participatory disease surveillance to: i) measure the non-response bias in a participatory surveillance sample using WISDM; and ii) nowcast and forecast influenza activity in different parts of the world (using Influenzanet and Flu Near You). RESULTS: WISDM-based results measure the participatory and sample bias for three epidemic metrics i.e. attack rate, peak infection rate, and time-to-peak, and find the participatory bias to be the largest component of the total bias. The Influenzanet platform shows that digital participatory surveillance data combined with a realistic data-driven epidemiological model can provide both short-term and long-term forecasts of epidemic intensities, and the ground truth data lie within the 95 percent confidence intervals for most weeks. The statistical accuracy of the ensemble forecasts increase as the season progresses. The Flu Near You platform shows that participatory surveillance data provide accurate short-term flu activity forecasts and influenza activity predictions. The correlation of the HealthMap Flu Trends estimates with the observed CDC ILI rates is 0.99 for 2013-2015. Additional data sources lead to an error reduction of about 40% when compared to the estimates of the model that only incorporates CDC historical information. CONCLUSIONS: While the advantages of participatory surveillance, compared to traditional surveillance, include its timeliness, lower costs, and broader reach, it is limited by a lack of control over the characteristics of the population sample. Modeling and simulation can help overcome this limitation as well as provide real-time and long-term forecasting of influenza activity in data-poor parts of the world. JMIR Publications 2017-11-01 /pmc/articles/PMC5688248/ /pubmed/29092812 http://dx.doi.org/10.2196/publichealth.7344 Text en ©John S Brownstein, Shuyu Chu, Achla Marathe, Madhav V Marathe, Andre T Nguyen, Daniela Paolotti, Nicola Perra, Daniela Perrotta, Mauricio Santillana, Samarth Swarup, Michele Tizzoni, Alessandro Vespignani, Anil Kumar S Vullikanti, Mandy L Wilson, Qian Zhang. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 01.11.2017. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on http://publichealth.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Brownstein, John S
Chu, Shuyu
Marathe, Achla
Marathe, Madhav V
Nguyen, Andre T
Paolotti, Daniela
Perra, Nicola
Perrotta, Daniela
Santillana, Mauricio
Swarup, Samarth
Tizzoni, Michele
Vespignani, Alessandro
Vullikanti, Anil Kumar S
Wilson, Mandy L
Zhang, Qian
Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title_full Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title_fullStr Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title_full_unstemmed Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title_short Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches
title_sort combining participatory influenza surveillance with modeling and forecasting: three alternative approaches
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688248/
https://www.ncbi.nlm.nih.gov/pubmed/29092812
http://dx.doi.org/10.2196/publichealth.7344
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