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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes them of interest from a biotechnological and bioenergy perspective. Samples of an intertidal...

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Autores principales: D’haeseleer, Patrik, Lee, Jackson Z., Prufert-Bebout, Leslie, Burow, Luke C., Detweiler, Angela M., Weber, Peter K., Karaoz, Ulas, Brodie, Eoin L., Glavina del Rio, Tijana, Tringe, Susannah G., Bebout, Brad M., Pett-Ridge, Jennifer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688640/
https://www.ncbi.nlm.nih.gov/pubmed/29167704
http://dx.doi.org/10.1186/s40793-017-0279-6
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author D’haeseleer, Patrik
Lee, Jackson Z.
Prufert-Bebout, Leslie
Burow, Luke C.
Detweiler, Angela M.
Weber, Peter K.
Karaoz, Ulas
Brodie, Eoin L.
Glavina del Rio, Tijana
Tringe, Susannah G.
Bebout, Brad M.
Pett-Ridge, Jennifer
author_facet D’haeseleer, Patrik
Lee, Jackson Z.
Prufert-Bebout, Leslie
Burow, Luke C.
Detweiler, Angela M.
Weber, Peter K.
Karaoz, Ulas
Brodie, Eoin L.
Glavina del Rio, Tijana
Tringe, Susannah G.
Bebout, Brad M.
Pett-Ridge, Jennifer
author_sort D’haeseleer, Patrik
collection PubMed
description Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes them of interest from a biotechnological and bioenergy perspective. Samples of an intertidal microbial mat from the Elkhorn Slough estuary in Monterey Bay, California, were transplanted to a greenhouse at NASA Ames Research Center to study a 24-h diel cycle, in the presence or absence of molybdate (which inhibits biohydrogen consumption by sulfate reducers). Here, we present metagenomic analyses of four samples that will be used as references for future metatranscriptomic analyses of this diel time series.
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spelling pubmed-56886402017-11-22 Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate D’haeseleer, Patrik Lee, Jackson Z. Prufert-Bebout, Leslie Burow, Luke C. Detweiler, Angela M. Weber, Peter K. Karaoz, Ulas Brodie, Eoin L. Glavina del Rio, Tijana Tringe, Susannah G. Bebout, Brad M. Pett-Ridge, Jennifer Stand Genomic Sci Metagenome Report Cyanobacterial mats are laminated microbial ecosystems which occur in highly diverse environments and which may provide a possible model for early life on Earth. Their ability to produce hydrogen also makes them of interest from a biotechnological and bioenergy perspective. Samples of an intertidal microbial mat from the Elkhorn Slough estuary in Monterey Bay, California, were transplanted to a greenhouse at NASA Ames Research Center to study a 24-h diel cycle, in the presence or absence of molybdate (which inhibits biohydrogen consumption by sulfate reducers). Here, we present metagenomic analyses of four samples that will be used as references for future metatranscriptomic analyses of this diel time series. BioMed Central 2017-11-15 /pmc/articles/PMC5688640/ /pubmed/29167704 http://dx.doi.org/10.1186/s40793-017-0279-6 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Metagenome Report
D’haeseleer, Patrik
Lee, Jackson Z.
Prufert-Bebout, Leslie
Burow, Luke C.
Detweiler, Angela M.
Weber, Peter K.
Karaoz, Ulas
Brodie, Eoin L.
Glavina del Rio, Tijana
Tringe, Susannah G.
Bebout, Brad M.
Pett-Ridge, Jennifer
Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title_full Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title_fullStr Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title_full_unstemmed Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title_short Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
title_sort metagenomic analysis of intertidal hypersaline microbial mats from elkhorn slough, california, grown with and without molybdate
topic Metagenome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688640/
https://www.ncbi.nlm.nih.gov/pubmed/29167704
http://dx.doi.org/10.1186/s40793-017-0279-6
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