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SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images

In medical image processing, robust segmentation of inhomogeneous targets is a challenging problem. Because of the complexity and diversity in medical images, the commonly used semiautomatic segmentation algorithms usually fail in the segmentation of inhomogeneous objects. In this study, we propose...

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Detalles Bibliográficos
Autores principales: Chen, Haibin, Zhen, Xin, Gu, Xuejun, Yan, Hao, Cervino, Laura, Xiao, Yang, Zhou, Linghong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690082/
https://www.ncbi.nlm.nih.gov/pubmed/26103201
http://dx.doi.org/10.1120/jacmp.v16i2.5324
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author Chen, Haibin
Zhen, Xin
Gu, Xuejun
Yan, Hao
Cervino, Laura
Xiao, Yang
Zhou, Linghong
author_facet Chen, Haibin
Zhen, Xin
Gu, Xuejun
Yan, Hao
Cervino, Laura
Xiao, Yang
Zhou, Linghong
author_sort Chen, Haibin
collection PubMed
description In medical image processing, robust segmentation of inhomogeneous targets is a challenging problem. Because of the complexity and diversity in medical images, the commonly used semiautomatic segmentation algorithms usually fail in the segmentation of inhomogeneous objects. In this study, we propose a novel algorithm imbedded with a seed point autogeneration for random walks segmentation enhancement, namely SPARSE, for better segmentation of inhomogeneous objects. With a few user‐labeled points, SPARSE is able to generate extended seed points by estimating the probability of each voxel with respect to the labels. The random walks algorithm is then applied upon the extended seed points to achieve improved segmentation result. SPARSE is implemented under the compute unified device architecture (CUDA) programming environment on graphic processing unit (GPU) hardware platform. Quantitative evaluations are performed using clinical homogeneous and inhomogeneous cases. It is found that the SPARSE can greatly decrease the sensitiveness to initial seed points in terms of location and quantity, as well as the freedom of selecting parameters in edge weighting function. The evaluation results of SPARSE also demonstrate substantial improvements in accuracy and robustness to inhomogeneous target segmentation over the original random walks algorithm. PACS number: 87.57.nm
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spelling pubmed-56900822018-04-02 SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images Chen, Haibin Zhen, Xin Gu, Xuejun Yan, Hao Cervino, Laura Xiao, Yang Zhou, Linghong J Appl Clin Med Phys Medical Imaging In medical image processing, robust segmentation of inhomogeneous targets is a challenging problem. Because of the complexity and diversity in medical images, the commonly used semiautomatic segmentation algorithms usually fail in the segmentation of inhomogeneous objects. In this study, we propose a novel algorithm imbedded with a seed point autogeneration for random walks segmentation enhancement, namely SPARSE, for better segmentation of inhomogeneous objects. With a few user‐labeled points, SPARSE is able to generate extended seed points by estimating the probability of each voxel with respect to the labels. The random walks algorithm is then applied upon the extended seed points to achieve improved segmentation result. SPARSE is implemented under the compute unified device architecture (CUDA) programming environment on graphic processing unit (GPU) hardware platform. Quantitative evaluations are performed using clinical homogeneous and inhomogeneous cases. It is found that the SPARSE can greatly decrease the sensitiveness to initial seed points in terms of location and quantity, as well as the freedom of selecting parameters in edge weighting function. The evaluation results of SPARSE also demonstrate substantial improvements in accuracy and robustness to inhomogeneous target segmentation over the original random walks algorithm. PACS number: 87.57.nm John Wiley and Sons Inc. 2015-03-08 /pmc/articles/PMC5690082/ /pubmed/26103201 http://dx.doi.org/10.1120/jacmp.v16i2.5324 Text en © 2015 The Authors. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/3.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Medical Imaging
Chen, Haibin
Zhen, Xin
Gu, Xuejun
Yan, Hao
Cervino, Laura
Xiao, Yang
Zhou, Linghong
SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title_full SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title_fullStr SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title_full_unstemmed SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title_short SPARSE: Seed Point Auto‐Generation for Random Walks Segmentation Enhancement in medical inhomogeneous targets delineation of morphological MR and CT images
title_sort sparse: seed point auto‐generation for random walks segmentation enhancement in medical inhomogeneous targets delineation of morphological mr and ct images
topic Medical Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690082/
https://www.ncbi.nlm.nih.gov/pubmed/26103201
http://dx.doi.org/10.1120/jacmp.v16i2.5324
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