Cargando…
Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model aver...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690687/ https://www.ncbi.nlm.nih.gov/pubmed/29107987 http://dx.doi.org/10.1371/journal.pcbi.1005801 |
_version_ | 1783279657945137152 |
---|---|
author | Yamana, Teresa K. Kandula, Sasikiran Shaman, Jeffrey |
author_facet | Yamana, Teresa K. Kandula, Sasikiran Shaman, Jeffrey |
author_sort | Yamana, Teresa K. |
collection | PubMed |
description | Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model averaging. We generated retrospective forecasts of peak timing, peak incidence, and total incidence for seasonal influenza outbreaks in 48 states and 95 cities using 21 distinct forecast methods, and combined these individual forecasts to create weighted-average superensemble forecasts. We compared the relative performance of these individual and superensemble forecast methods by geographic location, timing of forecast, and influenza season. We find that, overall, the superensemble forecasts are more accurate than any individual forecast method and less prone to producing a poor forecast. Furthermore, we find that these advantages increase when the superensemble weights are stratified according to the characteristics of the forecast or geographic location. These findings indicate that different competing influenza prediction systems can be combined into a single more accurate forecast product for operational delivery in real time. |
format | Online Article Text |
id | pubmed-5690687 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-56906872017-11-29 Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States Yamana, Teresa K. Kandula, Sasikiran Shaman, Jeffrey PLoS Comput Biol Research Article Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model averaging. We generated retrospective forecasts of peak timing, peak incidence, and total incidence for seasonal influenza outbreaks in 48 states and 95 cities using 21 distinct forecast methods, and combined these individual forecasts to create weighted-average superensemble forecasts. We compared the relative performance of these individual and superensemble forecast methods by geographic location, timing of forecast, and influenza season. We find that, overall, the superensemble forecasts are more accurate than any individual forecast method and less prone to producing a poor forecast. Furthermore, we find that these advantages increase when the superensemble weights are stratified according to the characteristics of the forecast or geographic location. These findings indicate that different competing influenza prediction systems can be combined into a single more accurate forecast product for operational delivery in real time. Public Library of Science 2017-11-06 /pmc/articles/PMC5690687/ /pubmed/29107987 http://dx.doi.org/10.1371/journal.pcbi.1005801 Text en © 2017 Yamana et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yamana, Teresa K. Kandula, Sasikiran Shaman, Jeffrey Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title | Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title_full | Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title_fullStr | Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title_full_unstemmed | Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title_short | Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States |
title_sort | individual versus superensemble forecasts of seasonal influenza outbreaks in the united states |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690687/ https://www.ncbi.nlm.nih.gov/pubmed/29107987 http://dx.doi.org/10.1371/journal.pcbi.1005801 |
work_keys_str_mv | AT yamanateresak individualversussuperensembleforecastsofseasonalinfluenzaoutbreaksintheunitedstates AT kandulasasikiran individualversussuperensembleforecastsofseasonalinfluenzaoutbreaksintheunitedstates AT shamanjeffrey individualversussuperensembleforecastsofseasonalinfluenzaoutbreaksintheunitedstates |