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Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States

Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model aver...

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Autores principales: Yamana, Teresa K., Kandula, Sasikiran, Shaman, Jeffrey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690687/
https://www.ncbi.nlm.nih.gov/pubmed/29107987
http://dx.doi.org/10.1371/journal.pcbi.1005801
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author Yamana, Teresa K.
Kandula, Sasikiran
Shaman, Jeffrey
author_facet Yamana, Teresa K.
Kandula, Sasikiran
Shaman, Jeffrey
author_sort Yamana, Teresa K.
collection PubMed
description Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model averaging. We generated retrospective forecasts of peak timing, peak incidence, and total incidence for seasonal influenza outbreaks in 48 states and 95 cities using 21 distinct forecast methods, and combined these individual forecasts to create weighted-average superensemble forecasts. We compared the relative performance of these individual and superensemble forecast methods by geographic location, timing of forecast, and influenza season. We find that, overall, the superensemble forecasts are more accurate than any individual forecast method and less prone to producing a poor forecast. Furthermore, we find that these advantages increase when the superensemble weights are stratified according to the characteristics of the forecast or geographic location. These findings indicate that different competing influenza prediction systems can be combined into a single more accurate forecast product for operational delivery in real time.
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spelling pubmed-56906872017-11-29 Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States Yamana, Teresa K. Kandula, Sasikiran Shaman, Jeffrey PLoS Comput Biol Research Article Recent research has produced a number of methods for forecasting seasonal influenza outbreaks. However, differences among the predicted outcomes of competing forecast methods can limit their use in decision-making. Here, we present a method for reconciling these differences using Bayesian model averaging. We generated retrospective forecasts of peak timing, peak incidence, and total incidence for seasonal influenza outbreaks in 48 states and 95 cities using 21 distinct forecast methods, and combined these individual forecasts to create weighted-average superensemble forecasts. We compared the relative performance of these individual and superensemble forecast methods by geographic location, timing of forecast, and influenza season. We find that, overall, the superensemble forecasts are more accurate than any individual forecast method and less prone to producing a poor forecast. Furthermore, we find that these advantages increase when the superensemble weights are stratified according to the characteristics of the forecast or geographic location. These findings indicate that different competing influenza prediction systems can be combined into a single more accurate forecast product for operational delivery in real time. Public Library of Science 2017-11-06 /pmc/articles/PMC5690687/ /pubmed/29107987 http://dx.doi.org/10.1371/journal.pcbi.1005801 Text en © 2017 Yamana et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Yamana, Teresa K.
Kandula, Sasikiran
Shaman, Jeffrey
Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title_full Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title_fullStr Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title_full_unstemmed Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title_short Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States
title_sort individual versus superensemble forecasts of seasonal influenza outbreaks in the united states
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690687/
https://www.ncbi.nlm.nih.gov/pubmed/29107987
http://dx.doi.org/10.1371/journal.pcbi.1005801
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AT shamanjeffrey individualversussuperensembleforecastsofseasonalinfluenzaoutbreaksintheunitedstates