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Update notifications for the BioCyc collection of databases

We describe the BioCyc update notifications service, a new mechanism to keep researchers informed of the latest developments in their areas of interest. BioCyc.org combines databases for 9,300 sequenced organisms that integrate genome, metabolic pathway, and regulatory information with extensive bio...

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Detalles Bibliográficos
Autores principales: Paley, Suzanne, Karp, Peter D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5691348/
https://www.ncbi.nlm.nih.gov/pubmed/29220477
http://dx.doi.org/10.1093/database/bax086
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author Paley, Suzanne
Karp, Peter D
author_facet Paley, Suzanne
Karp, Peter D
author_sort Paley, Suzanne
collection PubMed
description We describe the BioCyc update notifications service, a new mechanism to keep researchers informed of the latest developments in their areas of interest. BioCyc.org combines databases for 9,300 sequenced organisms that integrate genome, metabolic pathway, and regulatory information with extensive bioinformatics tools. Users of the BioCyc website can register their specific areas of interest online by specifying a set of genes, pathways and/or Gene Ontology terms. Then, when significant new information becomes available in a BioCyc database in a user’s interest areas (usually due to curation), an email notification is sent to the user. The BioCyc ontology is leveraged to identify changes that are both relevant to a user’s specified interests and worthy of notification. Every effort is made to ensure that the resulting email text is both concise and informative, with links to relevant BioCyc pages. Database URL: https://BioCyc.org, https://EcoCyc.org, https://MetaCyc.org
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spelling pubmed-56913482017-12-11 Update notifications for the BioCyc collection of databases Paley, Suzanne Karp, Peter D Database (Oxford) Database Update We describe the BioCyc update notifications service, a new mechanism to keep researchers informed of the latest developments in their areas of interest. BioCyc.org combines databases for 9,300 sequenced organisms that integrate genome, metabolic pathway, and regulatory information with extensive bioinformatics tools. Users of the BioCyc website can register their specific areas of interest online by specifying a set of genes, pathways and/or Gene Ontology terms. Then, when significant new information becomes available in a BioCyc database in a user’s interest areas (usually due to curation), an email notification is sent to the user. The BioCyc ontology is leveraged to identify changes that are both relevant to a user’s specified interests and worthy of notification. Every effort is made to ensure that the resulting email text is both concise and informative, with links to relevant BioCyc pages. Database URL: https://BioCyc.org, https://EcoCyc.org, https://MetaCyc.org Oxford University Press 2017-11-14 /pmc/articles/PMC5691348/ /pubmed/29220477 http://dx.doi.org/10.1093/database/bax086 Text en © The Author(s) 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Paley, Suzanne
Karp, Peter D
Update notifications for the BioCyc collection of databases
title Update notifications for the BioCyc collection of databases
title_full Update notifications for the BioCyc collection of databases
title_fullStr Update notifications for the BioCyc collection of databases
title_full_unstemmed Update notifications for the BioCyc collection of databases
title_short Update notifications for the BioCyc collection of databases
title_sort update notifications for the biocyc collection of databases
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5691348/
https://www.ncbi.nlm.nih.gov/pubmed/29220477
http://dx.doi.org/10.1093/database/bax086
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