Cargando…

Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea

The mitochondrial genomes (mitogenomes) of Formosatettix qinlingensis, Coptotettix longjiangensis and Thoradonta obtusilobata (Orthoptera: Caelifera: Tetrigoidea) were sequenced in this study, and almost the entire mitogenomes of these species were determined. The mitogenome sequences obtained for t...

Descripción completa

Detalles Bibliográficos
Autores principales: Lin, Li-Liang, Li, Xue-Juan, Zhang, Hong-Li, Zheng, Zhe-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5694214/
https://www.ncbi.nlm.nih.gov/pubmed/29158966
http://dx.doi.org/10.7717/peerj.4002
_version_ 1783280095756025856
author Lin, Li-Liang
Li, Xue-Juan
Zhang, Hong-Li
Zheng, Zhe-Min
author_facet Lin, Li-Liang
Li, Xue-Juan
Zhang, Hong-Li
Zheng, Zhe-Min
author_sort Lin, Li-Liang
collection PubMed
description The mitochondrial genomes (mitogenomes) of Formosatettix qinlingensis, Coptotettix longjiangensis and Thoradonta obtusilobata (Orthoptera: Caelifera: Tetrigoidea) were sequenced in this study, and almost the entire mitogenomes of these species were determined. The mitogenome sequences obtained for the three species were 15,180, 14,495 and 14,538 bp in length, respectively, and each sequence included 13 protein-coding genes (PCGs), partial sequences of rRNA genes (rRNAs), tRNA genes (tRNAs) and a A + T-rich region. The order and orientation of the gene arrangement pattern were identical to that of most Tetrigoidea species. Some conserved spacer sequences between trnS(UCN) and nad1 were useful to identify Tetrigoidea and Acridoidea. The Ka/Ks value of atp8 between Trachytettix bufo and other four Tetrigoidea species indicated that some varied sites in this gene might be related with the evolution of T. bufo. The three Tetrigoidea species were compared with other Caelifera. At the superfamily level, conserved sequences were observed in intergenic spacers, which can be used for superfamily level identification between Tetrigoidea and Acridoidea. Furthermore, a phylogenomic analysis was conducted based on the concatenated data sets from mitogenome sequences of 24 species of Orthoptera in the superorders Caelifera and Ensifera. Both maximum likelihood and bayesian inference analyses strongly supported Acridoidea and Tetrigoidea as forming monophyletic groups. The relationships among six Tetrigoidea species were (((((Tetrix japonica, Alulatettix yunnanensis), Formosatettix qinlingensis), Coptotettix longjiangensis), Trachytettix bufo), Thoradonta obtusilobata).
format Online
Article
Text
id pubmed-5694214
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-56942142017-11-20 Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea Lin, Li-Liang Li, Xue-Juan Zhang, Hong-Li Zheng, Zhe-Min PeerJ Entomology The mitochondrial genomes (mitogenomes) of Formosatettix qinlingensis, Coptotettix longjiangensis and Thoradonta obtusilobata (Orthoptera: Caelifera: Tetrigoidea) were sequenced in this study, and almost the entire mitogenomes of these species were determined. The mitogenome sequences obtained for the three species were 15,180, 14,495 and 14,538 bp in length, respectively, and each sequence included 13 protein-coding genes (PCGs), partial sequences of rRNA genes (rRNAs), tRNA genes (tRNAs) and a A + T-rich region. The order and orientation of the gene arrangement pattern were identical to that of most Tetrigoidea species. Some conserved spacer sequences between trnS(UCN) and nad1 were useful to identify Tetrigoidea and Acridoidea. The Ka/Ks value of atp8 between Trachytettix bufo and other four Tetrigoidea species indicated that some varied sites in this gene might be related with the evolution of T. bufo. The three Tetrigoidea species were compared with other Caelifera. At the superfamily level, conserved sequences were observed in intergenic spacers, which can be used for superfamily level identification between Tetrigoidea and Acridoidea. Furthermore, a phylogenomic analysis was conducted based on the concatenated data sets from mitogenome sequences of 24 species of Orthoptera in the superorders Caelifera and Ensifera. Both maximum likelihood and bayesian inference analyses strongly supported Acridoidea and Tetrigoidea as forming monophyletic groups. The relationships among six Tetrigoidea species were (((((Tetrix japonica, Alulatettix yunnanensis), Formosatettix qinlingensis), Coptotettix longjiangensis), Trachytettix bufo), Thoradonta obtusilobata). PeerJ Inc. 2017-11-15 /pmc/articles/PMC5694214/ /pubmed/29158966 http://dx.doi.org/10.7717/peerj.4002 Text en ©2017 Lin et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Entomology
Lin, Li-Liang
Li, Xue-Juan
Zhang, Hong-Li
Zheng, Zhe-Min
Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title_full Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title_fullStr Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title_full_unstemmed Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title_short Mitochondrial genomes of three Tetrigoidea species and phylogeny of Tetrigoidea
title_sort mitochondrial genomes of three tetrigoidea species and phylogeny of tetrigoidea
topic Entomology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5694214/
https://www.ncbi.nlm.nih.gov/pubmed/29158966
http://dx.doi.org/10.7717/peerj.4002
work_keys_str_mv AT linliliang mitochondrialgenomesofthreetetrigoideaspeciesandphylogenyoftetrigoidea
AT lixuejuan mitochondrialgenomesofthreetetrigoideaspeciesandphylogenyoftetrigoidea
AT zhanghongli mitochondrialgenomesofthreetetrigoideaspeciesandphylogenyoftetrigoidea
AT zhengzhemin mitochondrialgenomesofthreetetrigoideaspeciesandphylogenyoftetrigoidea